Difference between revisions of "Normal Mode Analysis of Glucocerebrosidase"

From Bioinformatikpedia
(→‎Elastic and Gaussian Network Models)
(→‎WEBnm@)
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=== WEBnm@ ===
  
=== WEBnm@ ===
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WEBnm@ is a web-server which provides automated computation and analysis of low-frequency normal modes of proteins. <ref>Hollup SM, Sælensminde G, Reuter N. WEBnm@: a web application for normal mode analysis of proteins BMC Bioinformatics. 2005 Mar 11;6(1):52 </ref>
   
 
''' Results '''
  
''' Results '''

Revision as of 00:34, 16 July 2011

Introduction

Elastic and Gaussian Network Models

WEBnm@

WEBnm@ is a web-server which provides automated computation and analysis of low-frequency normal modes of proteins. <ref>Hollup SM, Sælensminde G, Reuter N. WEBnm@: a web application for normal mode analysis of proteins BMC Bioinformatics. 2005 Mar 11;6(1):52 </ref>

Results


Figure 1: Normal Mode 7 calculated with WEBnm@
Figure 2: Normal Mode 8 calculated with WEBnm@
Figure 3: Normal Mode 9 calculated with WEBnm@
Figure 4: Normal Mode 10 calculated with WEBnm@
Figure 5: Normal Mode 11 calculated with WEBnm@

elNémo

Results


Figure 6: Normal Mode 7 calculated with elNémo
Figure 7: Normal Mode 8 calculated with elNémo
Figure 8: Normal Mode 9 calculated with elNémo
Figure 9: Normal Mode 10 calculated with elNémo
Figure 10: Normal Mode 11 calculated with elNémo

Discussion

Anisotropic Network Model

oGNM

NOMAD-Ref

Discussion

All-atom NMA

Comparison NMA / MD

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