Difference between revisions of "Animated Gifs"
(Created page with "== Animated Gifs == Some methods offer the user already some animated gifs, but some methods only provide pymol skripts. Here we explain how to create animated gifs for each met…") |
(→Animated Gifs) |
||
| Line 1: | Line 1: | ||
== Animated Gifs == |
== Animated Gifs == |
||
| − | Some methods offer the user already some animated gifs, but some methods only provide pymol skripts. Here we explain how to create animated gifs for each method. |
+ | Some methods offer the user already some animated gifs, but some methods only provide pymol skripts. Here we explain how to create animated gifs for each method.<br><br> |
=== Webnma === |
=== Webnma === |
||
| − | We did not find any method the visualize the VMD or DCD file. Therefore we created the pictures manually. |
+ | We did not find any method the visualize the VMD or DCD file. Therefore we created the pictures manually. <br><br> |
| − | 1) right click on the animation to see the menue |
+ | 1) right click on the animation to see the menue<br> |
| − | 2) Animation -> Framerate einstellen -> 5 |
+ | 2) Animation -> Framerate einstellen -> 5<br> |
| − | 3) Animation -> Anhalten |
+ | 3) Animation -> Anhalten<br> |
| − | 4) Datei -> exportiere Gif Abbild |
+ | 4) Datei -> exportiere Gif Abbild<br> |
| − | 5) Animation -> Nächster Frame |
+ | 5) Animation -> Nächster Frame<br> |
| − | 6) Repeat step 4 and 5 until you made pictures of the whole motion |
+ | 6) Repeat step 4 and 5 until you made pictures of the whole motion<br> |
| − | 7) Now search for a program which allows you the create animated gifs (we used http://www.createagif.net/ but this site only allows to upload 20 pictures, but the site accepts gif and png files) |
+ | 7) Now search for a program which allows you the create animated gifs (we used http://www.createagif.net/ but this site only allows to upload 20 pictures, but the site accepts gif and png files)<br> |
| − | 8) Save the gif and upload it to the wiki |
+ | 8) Save the gif and upload it to the wiki<br> |
=== Anisotropic Network Model web server === |
=== Anisotropic Network Model web server === |
||
| − | 1) Create Pymol Scripts for each Model you want to visualize |
+ | 1) Create Pymol Scripts for each Model you want to visualize<br> |
| − | 2) Download the three files. The files have to be in the same directory |
+ | 2) Download the three files. The files have to be in the same directory<br> |
| − | 3) Start pymol and load the pml file with Run into Pymol |
+ | 3) Start pymol and load the pml file with Run into Pymol<br> |
| − | 4) Start the animation (click on the play button on the lower right side to see the visualisation |
+ | 4) Start the animation (click on the play button on the lower right side to see the visualisation<br> |
| − | 5) Save movie as PNG Images |
+ | 5) Save movie as PNG Images<br> |
| − | 6) Continue as on Webnma at step 7 |
+ | 6) Continue as on Webnma at step 7<br> |
=== NOMAD-Ref === |
=== NOMAD-Ref === |
||
| − | 1) Download different modes |
+ | 1) Download different modes<br> |
| − | 2) Load it in pymol |
+ | 2) Load it in pymol<br> |
| − | 3) Continue on Anisotropic Network Model web server, step 4 |
+ | 3) Continue on Anisotropic Network Model web server, step 4<br> |
=== All-atom NMA using Gromacs on the NOMAD-Ref server === |
=== All-atom NMA using Gromacs on the NOMAD-Ref server === |
||
Revision as of 12:48, 14 July 2011
Contents
Animated Gifs
Some methods offer the user already some animated gifs, but some methods only provide pymol skripts. Here we explain how to create animated gifs for each method.
Webnma
We did not find any method the visualize the VMD or DCD file. Therefore we created the pictures manually.
1) right click on the animation to see the menue
2) Animation -> Framerate einstellen -> 5
3) Animation -> Anhalten
4) Datei -> exportiere Gif Abbild
5) Animation -> Nächster Frame
6) Repeat step 4 and 5 until you made pictures of the whole motion
7) Now search for a program which allows you the create animated gifs (we used http://www.createagif.net/ but this site only allows to upload 20 pictures, but the site accepts gif and png files)
8) Save the gif and upload it to the wiki
Anisotropic Network Model web server
1) Create Pymol Scripts for each Model you want to visualize
2) Download the three files. The files have to be in the same directory
3) Start pymol and load the pml file with Run into Pymol
4) Start the animation (click on the play button on the lower right side to see the visualisation
5) Save movie as PNG Images
6) Continue as on Webnma at step 7
NOMAD-Ref
1) Download different modes
2) Load it in pymol
3) Continue on Anisotropic Network Model web server, step 4
All-atom NMA using Gromacs on the NOMAD-Ref server
see at instructions fo NOMAD-Ref
