Difference between revisions of "Normal mode analysis HEXA"
From Bioinformatikpedia
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=== Results === |
=== Results === |
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| + | We took the first five models (7, 8, 9, 10, 11). |
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| + | |||
| + | Here you can see the normalized squared atomic displacments of our models: |
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| + | |||
| + | {| border="1" style="text-align:center; border-spacing:0;" |
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| + | |model 7 |
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| + | |model 8 |
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| + | |model 9 |
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| + | |model 10 |
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| + | |model 11 |
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| + | |- |
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| + | |[[Image:mode_1_plot.png|thumb|150px|...]] |
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| + | |[[Image:mode_2_plot.png|thumb|150px|...]] |
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| + | |[[Image:mode_3_plot.png|thumb|150px|...]] |
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| + | |[[Image:mode_4_plot.png|thumb|150px|...]] |
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| + | |[[Image:mode_5_plot.png|thumb|150px|...]] |
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| + | |- |
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| + | |} |
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| + | |||
| + | |||
| + | Here you can see the motion of our analyses. |
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| + | |||
| + | {| border="1" style="text-align:center; border-spacing:0;" |
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| + | |model 7 |
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| + | |model 8 |
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| + | |model 9 |
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| + | |model 10 |
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| + | |model 11 |
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| + | |- |
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| + | |[[Image:model7.gif|thumb|150px|normalized squared atomic displacments of model 7]] |
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| + | |[[Image:webnma_model8.gif|thumb|150px|normalized squared atomic displacments of model 8]] |
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| + | |[[Image:webnma_model9.gif|thumb|150px|normalized squared atomic displacments of model 9]] |
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| + | |[[Image:webnma_model10.gif|thumb|150px|normalized squared atomic displacments of model 10]] |
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| + | |[[Image:webnma_model11.gif|thumb|150px|normalized squared atomic displacments of model 11]] |
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| + | |- |
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| + | |} |
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== All-atom NMA using Gromacs on the NOMAD-Ref server == |
== All-atom NMA using Gromacs on the NOMAD-Ref server == |
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Revision as of 11:40, 14 July 2011
Contents
Webnma
General information
Results
We analysed the five models with the lowest energy values. Webnma calculates fourteen different models with following energy values:
| Mode Index | Deformation Energy |
| 7 | 1041.88 |
| 8 | 1318.21 |
| 9 | 1738.30 |
| 10 | 2841.31 |
| 11 | 3135.09 |
| 12 | 4100.18 |
| 13 | 3911.06 |
| 14 | 5337.50 |
| 15 | 5741.69 |
| 16 | 6513.85 |
| 17 | 6081.05 |
| 18 | 6882.96 |
| 19 | 7514.14 |
| 20 | 7943.67 |
We took the first five models (7, 8, 9, 10, 11).
Here you can see the normalized squared atomic displacments of our models:
| model 7 | model 8 | model 9 | model 10 | model 11 |
Here you can see the motion of our analyses.
| model 7 | model 8 | model 9 | model 10 | model 11 |
NOMAD-Ref
General information
Results
We took the first five models (7, 8, 9, 10, 11).
Here you can see the normalized squared atomic displacments of our models:
| model 7 | model 8 | model 9 | model 10 | model 11 |
Here you can see the motion of our analyses.
| model 7 | model 8 | model 9 | model 10 | model 11 |
