Difference between revisions of "Sequence-based mutation analysis BCKDHA"
From Bioinformatikpedia
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| + | == PSSM == |
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| + | PsiBlast was run using the following command: |
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| + | blastpgp -i sequence.fasta -j 5 -d /data/blast/nr/nr -C profile.ckp |
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==SNAP== |
==SNAP== |
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Revision as of 16:45, 21 June 2011
Contents
Subset of mutations
| Reference amino acid | Mutated amino acid | BLOSUM62 | PAM1 | PAM250 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Position | Residue | Properties | Structure | Residue | Properties | Structure | |||
| 29 | G | E | |||||||
| 125 | Q | E | |||||||
| 166 | Y | N | |||||||
| 249 | G | S | |||||||
| 264 | C | W | |||||||
| 265 | R | W | |||||||
| 326 | I | T | |||||||
| 361 | I | V | |||||||
| 409 | F | C | |||||||
| 438 | Y | N | |||||||
PSSM
PsiBlast was run using the following command: blastpgp -i sequence.fasta -j 5 -d /data/blast/nr/nr -C profile.ckp
