Difference between revisions of "Reference Alignment BCKDHA"

From Bioinformatikpedia
(→‎Alignment NP000700.1 and Uniprot)
(→‎Alignment NP000700.1 and Uniprot)
Line 1: Line 1:
 
== Alignment NP000700.1 and Uniprot ==
  
== Alignment NP000700.1 and Uniprot ==
−
<tt>
 +
<code>
 
########################################
  
########################################
 
# Program: needle
  
# Program: needle
Line 78: Line 78:
 
#---------------------------------------
  
#---------------------------------------
 
#---------------------------------------
  
#---------------------------------------
−
</tt>
 +
</code>
   
 
== Alignment NP000700.1 and NP_064543.3 ==
  
== Alignment NP000700.1 and NP_064543.3 ==

Revision as of 15:48, 18 June 2011

Alignment NP000700.1 and Uniprot

  2. Program: needle
  3. Rundate: Sat 18 Jun 2011 15:40:24
  4. Commandline: needle
  5. -auto
  6. -stdout
  7. -asequence emboss_needle-I20110618-154022-0862-15396676-pg.asequence
  8. -bsequence emboss_needle-I20110618-154022-0862-15396676-pg.bsequence
  9. -datafile EBLOSUM62
  10. -gapopen 10.0
  11. -gapextend 0.5
  12. -endopen 10.0
  13. -endextend 0.5
  14. -aformat3 pair
  15. -sprotein1
  16. -sprotein2
  17. Align_format: pair
  18. Report_file: stdout
  1. =======================================
  3. Aligned_sequences: 2
  4. 1: ODBA_HUMAN
  5. 2: NP_000700.1
  6. Matrix: EBLOSUM62
  7. Gap_penalty: 10.0
  8. Extend_penalty: 0.5
  10. Length: 445
  11. Identity: 445/445 (100.0%)
  12. Similarity: 445/445 (100.0%)
  13. Gaps: 0/445 ( 0.0%)
  14. Score: 2348.0
  17. =======================================

ODBA_HUMAN 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50

ODBA_HUMAN 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100

ODBA_HUMAN 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150

ODBA_HUMAN 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200

ODBA_HUMAN 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250

ODBA_HUMAN 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300

ODBA_HUMAN 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350

ODBA_HUMAN 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400

ODBA_HUMAN 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445 

                    |||||||||||||||||||||||||||||||||||||||||||||

NP_000700.1 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445


  1. ---------------------------------------
  2. ---------------------------------------

Alignment NP000700.1 and NP_064543.3

  1. Program: needle
  2. Rundate: Sat 18 Jun 2011 15:33:48
  3. Commandline: needle
  4. -auto
  5. -stdout
  6. -asequence emboss_needle-I20110618-153347-0476-45685691-pg.asequence
  7. -bsequence emboss_needle-I20110618-153347-0476-45685691-pg.bsequence
  8. -datafile EBLOSUM62
  9. -gapopen 10.0
  10. -gapextend 0.5
  11. -endopen 10.0
  12. -endextend 0.5
  13. -aformat3 pair
  14. -sprotein1
  15. -sprotein2
  16. Align_format: pair
  17. Report_file: stdout
  1. =======================================
  3. Aligned_sequences: 2
  4. 1: NP_064543.3
  5. 2: NP_000700.1
  6. Matrix: EBLOSUM62
  7. Gap_penalty: 10.0
  8. Extend_penalty: 0.5
  10. Length: 497
  11. Identity: 49/497 ( 9.9%)
  12. Similarity: 86/497 (17.3%)
  13. Gaps: 314/497 (63.2%)
  14. Score: 30.0
  17. =======================================

NP_064543.3 1 -------------------------------------------------- 0

NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50

NP_064543.3 1 -------------------------------------------------- 0

NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100

NP_064543.3 1 -----------------------------------MEEETHTDAKIRAEN 15 

                                                       .||.||.

NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHV-------- 142

NP_064543.3 16 GTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK 65 

                                               |||:.|. :|.::.|.|..|.|.

NP_000700.1 143 ---------------------------GSAAALD-NTDLVFGQYREAGVL 164

NP_064543.3 66 VSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE-------AVVLG 108 

                    :.::.    .||:.:....|......|.|:..:...|:       :..|.

NP_000700.1 165 MYRDY----PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 210

NP_064543.3 109 TLHPRTSITVVLQVVSDAGSLLACCL--NAACMALVDAGVPMRA-LFCGV 155 

                    |..|:..........::|..::.|..  .||......||....| |.|.:

NP_000700.1 211 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 260

NP_064543.3 156 ACALDSDGTLVLDPTSKQEK----EAR----AVLTFALDSVERKLLMSST 197 

                    .....::|..:..|||:|.:    .||    .:::..:|..:...:.::|

NP_000700.1 261 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNAT 310

NP_064543.3 198 KGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR---YSKS--------- 235 

                    |         :....|.|.:|   .|..|::..|   :|.|

NP_000700.1 311 K---------EARRRAVAENQ---PFLIEAMTYRIGHHSTSDDSSAYRSV 348

NP_064543.3 236 -------------------------------------------------- 235

NP_000700.1 349 DEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 398

NP_064543.3 236 ----------------------------------------------- 235

NP_000700.1 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445


  1. ---------------------------------------
  2. ---------------------------------------



Alignment NM_000709.3 NP000700.1 (translated)

  2. Program: needle
  3. Rundate: Sat 18 Jun 2011 15:42:31
  4. Commandline: needle
  5. -auto
  6. -stdout
  7. -asequence emboss_needle-I20110618-154230-0254-14289745-pg.asequence
  8. -bsequence emboss_needle-I20110618-154230-0254-14289745-pg.bsequence
  9. -datafile EBLOSUM62
  10. -gapopen 10.0
  11. -gapextend 0.5
  12. -endopen 10.0
  13. -endextend 0.5
  14. -aformat3 pair
  15. -sprotein1
  16. -sprotein2
  17. Align_format: pair
  18. Report_file: stdout
  1. =======================================
  3. Aligned_sequences: 2
  4. 1: NP_000700.1
  5. 2: EMBOSS_001
  6. Matrix: EBLOSUM62
  7. Gap_penalty: 10.0
  8. Extend_penalty: 0.5
  10. Length: 458
  11. Identity: 445/458 (97.2%)
  12. Similarity: 445/458 (97.2%)
  13. Gaps: 13/458 ( 2.8%)
  14. Score: 2348.0
  17. =======================================

NP_000700.1 1 -------------MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 37 

                                 |||||||||||||||||||||||||||||||||||||

EMBOSS_001 1 LRECRTAEWLLAKMAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 50

NP_000700.1 38 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 87 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 51 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 100

NP_000700.1 88 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 137 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 101 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 150

NP_000700.1 138 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 187 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 151 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 200

NP_000700.1 188 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 237 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 201 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 250

NP_000700.1 238 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 287 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 251 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 300

NP_000700.1 288 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 337 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 301 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 350

NP_000700.1 338 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 387 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 351 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 400

NP_000700.1 388 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 437 

                    ||||||||||||||||||||||||||||||||||||||||||||||||||

EMBOSS_001 401 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 450

NP_000700.1 438 YPLDHFDK 445 

                    ||||||||

EMBOSS_001 451 YPLDHFDK 458


  1. ---------------------------------------
  2. ---------------------------------------
Retrieved from "https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php?title=Reference_Alignment_BCKDHA&oldid=6088"