Difference between revisions of "Reference Sequence BCKDHA"
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> bckdha 445 aminoacids; Mw=50481.62Da |
> bckdha 445 aminoacids; Mw=50481.62Da |
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| + | MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQF</font>SSLDDKPQFPGASAE |
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| − | MAVAIAAARVWRLNRGLSQA |
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| + | FIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILY |
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| − | ALLLLRQPGARGLARSHPPR |
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| + | ESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYG |
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| − | QQQQF</font>SSLDDKPQFPGASAE |
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| + | NISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGA |
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| − | FIDKLEFIQPNVISGIPIYR |
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| + | ASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG |
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| − | VMDRQGQIINPSEDPHLPKE |
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| + | NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHP |
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| − | KVLKLYKSMTLLNTMDRILY |
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| + | ISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQL |
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| − | ESQRQGRISFYMTNYGEEGT |
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| + | RKQQESLARHLQTYGEHYPLDHFDK* |
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| − | HVGSAAALDNTDLVFGQYRE |
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| − | AGVLMYRDYPLELFMAQCYG |
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| − | NISDLGKGRQMPVHYGCKER |
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| − | HFVTISSPLATQIPQAVGAA |
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| − | YAAKRANANRVVICYFGEGA |
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| − | ASEGDAHAGFNFAATLECPI |
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| − | IFFCRNNGYAISTPTSEQYR |
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| − | GDGIAARGPGYGIMSIRVDG |
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| − | NDVFAVYNATKEARRRAVAE |
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| − | NQPFLIEAMTYRIGHHSTSD |
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| − | DSSAYRSVDEVNYWDKQDHP |
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| − | ISRLRHYLLSQGWWDEEQEK |
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| − | AWRKQSRRKVMEAFEQAERK |
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| − | PKPNPNLLFSDVYQEMPAQL |
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| − | RKQQESLARHLQTYGEHYPL |
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| − | DHFDK* |
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Revision as of 17:04, 16 June 2011
Sequence
- Uniprot:
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2
MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDDKPQFPGASAE
FIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILY
ESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYG
NISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGA
ASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG
NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHP
ISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQL
RKQQESLARHLQTYGEHYPLDHFDK
Sequence info: [1] The Uniprot sequence is 445 aa long, as is contains the transit peptide sequence from position 1-45.
- PDB:
>1U5B:A|PDBID|CHAIN|SEQUENCE
SSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQ
GRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTI
SSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIA
ARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLR
HYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK
Sequence info: [2]
Mutated sequence
The following sequence shows the sequence inclusive all point mutations (missense/nonsense) listed in HGMD.
> bckdha 445 aminoacids; Mw=50481.62Da
MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDDKPQFPGASAE FIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILY ESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYG NISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGA ASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHP ISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQL RKQQESLARHLQTYGEHYPLDHFDK*
The following sequence is the reference sequence used by dbSNP. Note that this sequence is longer that 400 amino acids (protein length) and even longer than 445 amino acids (protein plus signal sequence). It contains additional amino acids both at the beginning and the end of the sequence.
LRECRTAEWLLAKMAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQF SSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK .DLLSPPPPILSYPER.PHSKGSRGT.QHTTVFPSQLPLKYSAARAAATLHPCSSRLLHCQGTASAAVAEAPSAPSSPVVTVPSPRGWVRAHSGLEAPLGMGWTWQVSLWNLRRCEWPAEVTNKLHLCAWLSTKKKKKK
more about Sequence_Alignments
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