Difference between revisions of "Mapping SNPs HEXA"
From Bioinformatikpedia
(→Comparison of mutations in HGMD and SNP-DB) |
(→Comparison of mutations in HGMD and SNP-DB) |
||
| Line 171: | Line 171: | ||
Mutations annotated only in SNP-DB: |
Mutations annotated only in SNP-DB: |
||
| − | + | {| border="1" style="text-align:center; border-spacing:0;" |
|
|- |
|- |
||
|Position |
|Position |
||
Revision as of 17:05, 14 June 2011
Comparison of mutations in HGMD and SNP-DB
- Mutations annotated in both databases:
| Position | Amino Acids | Codons |
| 26 | Trp -> Ter | TGGc -> TGA |
| 39 | Leu -> Arg | CTT -> CGT |
| 127 | Leu -> Phe | aCTC -> TTC |
| 127 | Leu -> Arg | CTC -> CGC |
| 137 | Arg -> Ter | cCGA -> TGA |
| 170 | Arg -> Trp | cCGG -> TGG |
| 170 | Arg -> Gln | CGG -> CAG |
| 178 | Arg -> His | CGC -> CAC |
| 178 | Arg -> Leu | CGC -> CTC |
| 178 | Arg -> Cys | tCGC -> TGC |
| 180 | Tyr -> Ter | TACc -> TAG |
| 180 | Tyr -> His | tTAC -> CAC |
| 197 | Lys -> Thr | AAA -> ACA |
| 200 | Val -> Met | cGTG -> ATG |
| 204 | His -> Arg | CAT -> CGT |
| 210 | Ser -> Phe | TCC -> TTC |
| 211 | Phe -> Ser | TTC -> TCC |
| 247 | Arg -> Trp | aCGG -> TGG |
| 250 | Gly -> Ser | gGGT -> AGT |
| 250 | Gly -> Asp | GGT -> GAT |
| 250 | Gly -> Val | GGT -> GTT |
| 258 | Asp -> His | tGAC -> CAC |
| 269 | Gly -> Ser | aGGT -> AGT |
| 269 | Gly -> Asp | GGT -> GAT |
| 301 | Met -> Arg | ATG -> AGG |
| 329 | Trp -> Ter | TGG -> TAG |
| 393 | Arg -> Ter | gCGA -> TGA |
| 420 | Trp -> Cys | TGGt -> TGC |
| 420 | Trp -> Cys | TGGt -> TGT |
| 451 | Leu -> Val | tCTG -> GTG |
| 454 | Gly -> Asp | GGT -> GAT |
| 454 | Gly -> Ser | tGGT -> AGT |
| 474 | Trp -> Cys | TGGc -> TGC |
| 482 | Glu -> Lys | cGAA -> AAA |
| 485 | Trp -> Arg | gTGG -> CGG |
| 499 | Arg -> Cys | aCGT -> TGT |
| 499 | Arg -> His | CGT -> CAT |
| 504 | Arg -> Cys | cCGC -> TGC |
| 504 | Arg -> His | CGC -> CAC |
Mutations annotated only in HGMD: not found
Mutations annotated only in SNP-DB:
| Position | Amino Acids | Codons | |
| 248 | Asp -> Lys | GAA -> AAA | |
| Arg -> Glu | CGA -> CAA | ||
| Pro -> Pro | CCG -> CCA | ||
| 203 | STOP -> Arg | TGA -> CGA | |
| Leu -> Pro | CTG -> CCG | ||
| Thr -> Thr | ACT -> ACC | ||
| 179 | Val -> Leu | GTA -> CTA | |
| Ser -> Thr | AGT -> ACT | ||
| Asp -> Asp | GAG -> GAC | ||
| 191 | Asp -> Asn | GAC -> AAC | |
| Arg -> Lys | AGA -> AAA | ||
| Asp -> Asp | GAG -> GAA | ||
| 116 | Phe -> Leu | TTC -> CTC | |
| Leu -> Pro | CTT -> CCT | ||
| Thr -> Thr | ACT -> ACC | ||
| 116 | Ser -> Pro | TCC -> CCC | |
| Phe -> Ser | TTC -> TCC | ||
| Val -> Val | GTT -> GTC | ||
| 446 | Gly -> Arg | GGG -> AGG | |
| Arg -> Glu | CGG -> CAG | ||
| Ser -> Ser | TCG -> TCA | ||
| 324 | STOP -> Arg | TGA -> CGA | |
| STOP -> Arg | TGA -> AGA | ||
| test | 972A>T -> 972A>T | ||
| Val -> Val | GTC -> GTA | ||
| 85 | Leu -> Leu | TTG -> CTG | |
| Phe -> Ser | TTT -> TCT | ||
| Leu -> Leu | CTT -> CTC | ||
| 85 | Val -> Met | GTG -> ATG | |
| Ser -> Asn | AGT -> AAT | ||
| Lys -> Lys | AAG -> AAA | ||
| 85 | Leu -> Leu | TTA -> CTA | |
| Val -> Ala | GTT -> GCT | ||
| Gly -> Gly | GGT -> GGC | ||
| 85 | Tyr -> His | TAC -> CAC | |
| Iso -> Thr | ATA -> ACA | ||
| Tyr -> Tyr | TAT -> TAC | ||
| 85 | Cys -> Arg | TGC -> CGC | |
| Leu -> Pro | CTG -> CCG | ||
| Ser -> Ser | TCT -> TCC | ||
| 85 | Trp -> Arg | TGG -> CGG | |
| Leu -> Ser | TTG -> TCG | ||
| Leu -> Leu | CTT -> CTC | ||
| 85 | Val -> Leu | GTG -> CTG | |
| Cys -> Ser | TGT -> TCT | ||
| Leu -> Leu | CTG -> CTC | ||
| 85 | Cys -> Arg | TGC -> CGC | |
| Met -> Thr | ATG -> ACG | ||
| Tyr -> Tyr | TAT -> TAC | ||
| 358 | Asp -> His | GAT -> CAT | |
| Arg -> Thr | AGA -> ACA | ||
| Glu -> His | CAG -> CAC | ||
| 85 | Ala -> Pro | GCT -> CCT | |
| Arg -> Pro | CGC -> CCC | ||
| Ser -> Ser | TCG -> TCC | ||
| 269 | Val -> Iso | GTT -> ATT | |
| Gly -> Asp | GGT -> GAT | ||
| Trp -> STOP | TGG -> TGA | ||
| 269 | STOP -> Arg | TGA -> CGA | |
| Leu -> Pro | CTG -> CCG | ||
| Pro -> Pro | CCT -> CCC | ||
| 138 | Asp -> Lys | GAG -> AAG | |
| Arg -> Lys | AGA -> AAA | ||
| Lys -> Lys | AAG -> AAA | ||
| 85 | Phe -> Leu | TTC -> CTC | |
| Phe -> Ser | TTT -> TCT | ||
| Phe -> Phe | TTT -> TTC | ||
| 138 | Asp -> Lys | GAA -> AAA | |
| STOP -> STOP | TGA -> TAA | ||
| Leu -> Leu | TTG -> TTA | ||
| 85 | Val -> Iso | GTA -> ATA | |
| Cys -> Tyr | TGT -> TAT | ||
| Leu -> Leu | TTG -> TTA | ||
| 109 | Phe -> Leu | TTT -> CTT | |
| Leu -> Pro | CTT -> CCT | ||
| Thr -> Thr | ACT -> ACC | ||
| 191 | Ala -> Thr | GCC -> ACC | |
| Arg -> His | CGC -> CAC | ||
| Ser -> Ser | TCG -> TCA | ||
| 138 | Glu -> Lys | CAA -> AAA | |
| Thr -> Lys | ACA -> AAA | ||
| Asp -> Asp | GAC -> GAA | ||
| 85 | Cys -> Arg | TGT -> CGT | |
| Leu -> Pro | CTG -> CCG | ||
| Pro -> Pro | CCT -> CCC | ||
| 85 | Asp -> Asn | GAT -> AAT | |
| STOP -> STOP | TGA -> TAA | ||
| Met -> Iso | ATG -> ATA | ||
| 116 | Ser -> Ala | TCT -> GCT | |
| Phe -> Cys | TTC -> TGC | ||
| Iso -> Met | ATT -> ATG | ||
| 85 | Glu -> Lys | CAG -> AAG | |
| Thr -> Lys | ACA -> AAA | ||
| Asp -> Asp | GAC -> GAA | ||
| 85 | Ser -> Pro | TCT -> CCT | |
| Phe -> Ser | TTC -> TCC | ||
| Leu -> Leu | CTT -> CTC | ||
| 474 | Trp -> Arg | TGG -> CGG | |
| Met -> Thr | ATG -> ACG | ||
| Tyr -> Tyr | TAT -> TAC | ||
| 85 | Ala -> Thr | GCT -> ACT | |
| Arg -> His | CGC -> CAC | ||
| Ser -> Ser | TCG -> TCA | ||
| 540 | STOP -> Glu | TAG -> CAG | |
| Iso -> Thr | ATA -> ACA | ||
| His -> His | CAT -> CAC | ||
| 476 | Val -> Iso | GTT -> ATT | |
| Ser -> Asn | AGT -> AAT | ||
| Lys -> Lys | AAG -> AAA | ||
| 29 | Phe -> Leu | TTC -> CTC | |
| Val -> Ala | GTT -> GCT | ||
| Cys -> Cys | TGT -> TGC | ||
| 85 | Trp -> Arg | TGG -> CGG | |
| Leu -> Ser | TTG -> TCG | ||
| Phe -> Phe | TTT -> TTC | ||
| 85 | Leu -> Iso | CTA -> ATA | |
| Ser -> Tyr | TCT -> TAT | ||
| Phe -> Leu | TTC -> TTA | ||
| 138 | Asp -> Lys | GAG -> AAG | |
| STOP -> STOP | TGA -> TAA | ||
| Leu -> Leu | CTG -> CTA | ||
| 85 | Gly -> Arg | GGA -> AGA | |
| Arg -> Lys | AGG -> AAG | ||
| STOP -> STOP | TAG -> TAA | ||
| 85 | Val -> Leu | GTC -> CTC | |
| Gly -> Ala | GGT -> GCT | ||
| Gly -> Gly | GGG -> GGC | ||
| 208 | Leu -> Leu | TTG -> CTG | |
| Iso -> Thr | ATT -> ACT | ||
| Tyr -> Tyr | TAT -> TAC | ||
| 358 | Trp -> Arg | TGG -> AGG | |
| Leu -> Glu | CTG -> CAG | ||
| Pro -> Pro | CCT -> CCA | ||
| 358 | Trp -> Gly | TGG -> GGG | |
| Val -> Gly | GTG -> GGG | ||
| Ser -> Arg | AGT -> AGG | ||
| 444 | Ser -> Pro | TCA -> CCA | |
| Phe -> Ser | TTC -> TCC | ||
| Leu -> Leu | CTT -> CTC | ||
| 474 | Leu -> Leu | TTG -> CTG | |
| Val -> Ala | GTT -> GCT | ||
| Gly -> Gly | GGT -> GGC | ||
| 509 | STOP -> Glu | TAG -> CAG | |
| Iso -> Thr | ATA -> ACA | ||
| Tyr -> Tyr | TAT -> TAC | ||
| 85 | Asp -> Glu | GAG -> CAG | |
| STOP -> Ser | TGA -> TCA | ||
| Val -> Val | GTG -> GTC | ||
| 85 | Val -> Leu | GTT -> CTT | |
| Ser -> Thr | AGT -> ACT | ||
| Asp -> Asp | GAG -> GAC | ||
| 3 | Phe -> Leu | TTC -> CTC | |
| Val -> Ala | GTT -> GCT | ||
| Ser -> Ser | AGT -> AGC | ||
| 85 | Glu -> Lys | CAG -> AAG | |
| Ala -> Asp | GCA -> GAA | ||
| Cys -> STOP | TGC -> TGA | ||
| 85 | Asp -> Asn | GAC -> AAC | |
| Arg -> Glu | CGA -> CAA | ||
| Pro -> Pro | CCG -> CCA | ||
