Difference between revisions of "Homology based structure predictions"
From Bioinformatikpedia
(→SwissModel) |
(→SwissModel) |
||
| Line 23: | Line 23: | ||
== SwissModel == |
== SwissModel == |
||
| + | SwissProt is a server based tool provided by the SIB. It combines tools like PSI-PRED and DISOPRED for secondary structure and diordered region prediction.<br> |
||
| + | <br> |
||
The model created by SwissModel is based on a self hit, but we had no chance to exclude the protein itself from the prediction. Therefore we also run SwissModel in Alignment-Mode.(TODO) |
The model created by SwissModel is based on a self hit, but we had no chance to exclude the protein itself from the prediction. Therefore we also run SwissModel in Alignment-Mode.(TODO) |
||
Revision as of 16:11, 7 June 2011
Contents
Homologous
| PDB-ID | Identity | Description |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
| XXX | 100% | Kram |
ITasser
SwissModel
SwissProt is a server based tool provided by the SIB. It combines tools like PSI-PRED and DISOPRED for secondary structure and diordered region prediction.
The model created by SwissModel is based on a self hit, but we had no chance to exclude the protein itself from the prediction. Therefore we also run SwissModel in Alignment-Mode.(TODO)
Automated Mode
Model information:
Modelled residue range: 26 to 297
Based on template: 1a6zC (2.60 Å)
Sequence Identity [%]: 100
Evalue: 7.66e-163
Quality information:
QMEAN Z-Score: -1.035
