Difference between revisions of "Sequence-based mutation analysis (Phenylketonuria)"

From Bioinformatikpedia
(→‎Mutation dataset)
(→‎Investigate the mutations)
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===Investigate the mutations===
  
===Investigate the mutations===
 
====Ala-259-Val====
  
====Ala-259-Val====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Arg-123-Ile====
  
====Arg-123-Ile====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Gln-20-Leu====
  
====Gln-20-Leu====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Gly-103-Ser====
  
====Gly-103-Ser====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====His-64-Asn====
  
====His-64-Asn====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Ile-421-Thr====
  
====Ile-421-Thr====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Lys-341-Thr====
  
====Lys-341-Thr====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Phe-392-Ser====
  
====Phe-392-Ser====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Pro-416-Gln====
  
====Pro-416-Gln====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
  +
 
====Thr-266-Ala====
  
====Thr-266-Ala====
  +
*Amino acid properties:
  +
*Mutation position:
  +
*Substitution Matrices:
  +
*PSSM:
  +
*Mammalian homologs:
  +
*SIFT:
  +
*PolyPhen2:
  +
*SNAP:
  +
*MutationTaster:
   
 
== References ==
  
== References ==

Revision as of 09:45, 27 June 2013

Summary

...

Sequence-based mutation analysis

Lab journal

Mutation dataset

SNPs
Ala259Val Arg123Ile
Gln20Leu Gly103Ser
His64Asn Ile421Thr
Lys341Thr Phe392Ser
Pro416Gln Thr266Ala

Investigate the mutations

Ala-259-Val

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Arg-123-Ile

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Gln-20-Leu

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Gly-103-Ser

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

His-64-Asn

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Ile-421-Thr

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Lys-341-Thr

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Phe-392-Ser

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Pro-416-Gln

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

Thr-266-Ala

  • Amino acid properties:
  • Mutation position:
  • Substitution Matrices:
  • PSSM:
  • Mammalian homologs:
  • SIFT:
  • PolyPhen2:
  • SNAP:
  • MutationTaster:

References

<references/>

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