Difference between revisions of "Task 7: Research SNPs"

Revision as of 19:31, 23 June 2013

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HGMD

synonymous SNPS in coding region of isoform 1 human and transcript variant 1

cluster ID	MAF	SNP allel	residue	codon position	aa position
rs114758821	9E-4	G -> A	Pro	3	7
rs147297176	5E-4	C -> T	Phe	3	58
rs147426902	3.2E-3	T -> C	His	3	63
rs62625342	5E-4	C -> T	Ser	3	76
rs148480830	-	C -> G	Ala	3	162
rs182920795	5E-4	T -> A	Pro	3	253
rs201310322	-	C -> T	Pro	3	292
rs114038675	5E-4	G -> A	Glu	3	298
rs148632352	-	T -> C	Val	3	315
rs35201683	6.4E-3	C -> T	Tyr	3	342

!

@@ Line 48: / Line 48: @@
 === Results ===
-synonymous SNPS in coding region of isoform 1 human and trainscript variant 1
+synonymous SNPS in coding region of isoform 1 human and transcript variant 1
 {| class="colBasic2"
 ! cluster ID || MAF || SNP allel || residue || codon position || aa position
 |-
-| || 9E-4 || G -> A || Pro || 3 || 7
+| rs114758821 || 9E-4 || G -> A || Pro || 3 || 7
 |-
-| || 5E-4 || C -> T || Phe || 3 || 58
+| rs147297176 || 5E-4 || C -> T || Phe || 3 || 58
 |-
-| || 3.2E-3 || T -> C || His || 3 || 63
+| rs147426902 || 3.2E-3 || T -> C || His || 3 || 63
 |-
-| || 5E-4 || C -> T || Ser || 3 || 76
+| rs62625342 || 5E-4 || C -> T || Ser || 3 || 76
 |-
-| || - || C -> G || Ala || 3 || 162
+| rs148480830 || - || C -> G || Ala || 3 || 162
 |-
-| || 5E-4 || T -> A || Pro || 3 || 253
+| rs182920795 	 || 5E-4 || T -> A || Pro || 3 || 253
 |-
-| || - || C -> T || Pro || 3 || 292
+| rs201310322|| - || C -> T || Pro || 3 || 292
 |-
-| || 5E-4 || G -> A || Glu || 3 || 298
+| rs114038675 || 5E-4 || G -> A || Glu || 3 || 298
 |-
-| || - || T -> C || Val || 3 || 315
+| rs148632352  || - || T -> C || Val || 3 || 315
 |-
-| || 6.4E-3 || C -> T || Tyr || 3 || 342
+| rs35201683  || 6.4E-3 || C -> T || Tyr || 3 || 342
 |}
@@ Line 80: / Line 80: @@
 *How recent?
 *Where does the information come from?
+== Comparison of databases ==
+{| class="colBasic2"
+|! ||
+|-
+| ||
+|}
 == Mutation map ==