Difference between revisions of "Homology based structure prediction (Phenylketonuria)"
From Bioinformatikpedia
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<figure id="mod_1j8u"> |
<figure id="mod_1j8u"> |
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[[File:Modeller 2pah 1j8u.png|thumb|left|'''<caption>'''Structure of target 2pah (green) and template 1j8u (purple) superimposed. For the creation of the superimpsed structutre <code>modeller</code> was used.</caption>]] </figure> |
[[File:Modeller 2pah 1j8u.png|thumb|left|'''<caption>'''Structure of target 2pah (green) and template 1j8u (purple) superimposed. For the creation of the superimpsed structutre <code>modeller</code> was used.</caption>]] </figure> |
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| + | As 1j8u has 100% sequence identity we also tried a second one 2phm. |
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| − | <figure id=" |
+ | <figure id="mod_2phm"> |
| + | [[File:Modeller_2pah_2phm.png|thumb|left|'''<caption>'''Structure of target 2pah (green) and template 3luy (purple) superimposed. For the creation of the superimpsed structutre <code>modeller</code> was used.</caption>]] </figure> |
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| + | <figure id="mod_3luy"> |
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[[File:Modeller_2pah_3luy.png|thumb|left|'''<caption>'''Structure of target 2pah (green) and template 3luy (purple) superimposed. For the creation of the superimpsed structutre <code>modeller</code> was used.</caption>]] </figure> |
[[File:Modeller_2pah_3luy.png|thumb|left|'''<caption>'''Structure of target 2pah (green) and template 3luy (purple) superimposed. For the creation of the superimpsed structutre <code>modeller</code> was used.</caption>]] </figure> |
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Revision as of 16:51, 5 June 2013
Contents
Summary
...
Model calculation
Lab journal
...
Modeller
<figure id="mod_1j8u">
</figure>
As 1j8u has 100% sequence identity we also tried a second one 2phm. <figure id="mod_2phm">
</figure>
<figure id="mod_3luy">
</figure>
Swissmodel
SwissModel ... <ref name="swissmodel"> Konstantin Arnold, Lorenza Bordoli, Jürgen Kopp and Torsten Schwede (2006): "The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling". Bioinformatics Vol.22(2): 195-201. doi:10.1093/bioinformatics/bti770 </ref>
iTasser
iTasser...
Model evaluation
...
References
<references/>
