Difference between revisions of "MD simulation analysis TSD Journal"
From Bioinformatikpedia
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| + | Back to [[MD simulation analysis TSD|results]]. |
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| − | Journal for |
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| − | == alice == |
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| + | =Ramachandran plots= |
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| + | At first the .xvg files were parsed into the following format: |
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| + | ID Psi Phi Aa |
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| + | 1HMP:chain0:Pro5 -92.926842 12.941312 Proline |
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| + | 1HMP:chain0:Gly6 65.796807 -162.229709 Glycine |
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| + | 1HMP:chain0:Val7 -81.132082 121.413022 General |
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| + | |||
| + | Additionally the data for the background distribution was loaded from [http://www2.warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/ramachandran/#downloads|here].<br> |
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| + | Then the scipt [https://gist.github.com/3557539|draw_rama.R] was called. |
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Revision as of 20:09, 31 August 2012
Back to results.
Ramachandran plots
At first the .xvg files were parsed into the following format:
ID Psi Phi Aa 1HMP:chain0:Pro5 -92.926842 12.941312 Proline 1HMP:chain0:Gly6 65.796807 -162.229709 Glycine 1HMP:chain0:Val7 -81.132082 121.413022 General
Additionally the data for the background distribution was loaded from [1].
Then the scipt [2] was called.
