Difference between revisions of "Sequence-based predictions"
From Bioinformatikpedia
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==4. Prediction of GO terms== |
==4. Prediction of GO terms== |
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===GOPET=== |
===GOPET=== |
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| + | {| border="1" style="text-align:center; border-spacing:0;" |
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| + | !GOID |
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| + | !Aspect |
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| + | !Confidence |
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| + | !GO Term |
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| + | |- |
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| + | |GO:0004872 || F || 91% || receptor activity |
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| + | |- |
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| + | GO:0030106 || F || 88% || MHC class I receptor activity |
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| + | |- |
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| + | |} |
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===Pfam=== |
===Pfam=== |
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===ProtFun 2.2=== |
===ProtFun 2.2=== |
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Revision as of 15:04, 31 May 2011
Contents
Sequence-based predictions
1. Secondary structure prediction
PSIPRED
Jpred3
Comparison with DSSP
2. Prediction of disordered regions
DISOPRED
POODLE
IUPRED
3. Prediction of transmembrane alpha-helices and signal peptides
TMHMM
Phobius and PolyPhobius
OCTOPUS and SPOCTOPUS
SignalP
TargetP
4. Prediction of GO terms
GOPET
GO:0030106 || F || 88% || MHC class I receptor activity| GOID | Aspect | Confidence | GO Term |
|---|---|---|---|
| GO:0004872 | F | 91% | receptor activity |
