Difference between revisions of "Fabry:Normal mode analysis/Journal"

From Bioinformatikpedia
(→‎WEBnm@)
Line 11: Line 11:
 
Color: green2
  
Color: green2
 
Light: 0,2,3
  
Light: 0,2,3
  +
...rather not so good. I like pymol:
  +
delete 3HG2.mode9
  +
load 3HG2.mode10.xyz
  +
load_traj 3HG2.mode10.dcd
  +
show spheres, 3HG2.mode10
  +
color cyan, 3HG2.mode10
  +
zoom A
  +
color red, sele
  +
zoom B
  +
color red, sele
  +
  +
zoom
  +
show_as surface,3HG2.mode10
  +
set solvent_radius, 1.6
  +
mpng mode10
   
  +
make a movie
 
convert -delay 30 *.ppm modeX.gif
  
convert -delay 30 *.ppm modeX.gif

Revision as of 12:32, 5 July 2012

WEBnm@

Graphical representation VMD: 

Coloring Method: Chain
Material: Glossy
Drawing Method: QuickSurf
Radius Scale: 0.8
Density Isovalue: 0.3
Grid Spacing: 0.5
Surface Quality: Max
Orthographic View
Color: green2
Light: 0,2,3

...rather not so good. I like pymol: 

delete 3HG2.mode9
load 3HG2.mode10.xyz
load_traj 3HG2.mode10.dcd
show spheres, 3HG2.mode10
color cyan, 3HG2.mode10
zoom A
color red, sele
zoom B
color red, sele

zoom
show_as surface,3HG2.mode10
set solvent_radius, 1.6
mpng mode10

make a movie 

convert -delay 30 *.ppm modeX.gif
Retrieved from "https://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php?title=Fabry:Normal_mode_analysis/Journal&oldid=25872"