Difference between revisions of "Fabry:Structure-based mutation analysis/Journal"

From Bioinformatikpedia
(foldX)
Line 19: Line 19:
   
 
==foldX==
 
==foldX==
  +
ln -sf /opt/SS12-Practical/foldx/rotabase.txt
 
  +
wget http://www.rcsb.org/pdb/files/3S5Y.pdb
  +
perl ../repairPDB 3S5Y.pdb > 3S5Y_repaired.pdb
  +
/opt/SS12-Practical/foldx/FoldX.linux64 -runfile run.txt
   
 
==Minimise==
 
==Minimise==

Revision as of 13:26, 21 June 2012

Fabry Disease » Structure-based mutation analysis  » Journal


Preparation


Vizualisation

Create mutation

SCWRL


Comparison energies

foldX

ln -sf /opt/SS12-Practical/foldx/rotabase.txt
wget http://www.rcsb.org/pdb/files/3S5Y.pdb
perl ../repairPDB 3S5Y.pdb > 3S5Y_repaired.pdb 
/opt/SS12-Practical/foldx/FoldX.linux64 -runfile run.txt

Minimise

Gromacs