Difference between revisions of "MSUP-task7-journal"
From Bioinformatikpedia
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sequence mutated: |
sequence mutated: |
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| + | kpqfpgasaefidklefiqpnSvisgipiyrvmIdrqgqiinpsedphlpkekvlkly |
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| − | kpqfpgasaefidklefiqpSvisgipiyrvIdrqgqiinpsedphlp |
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| + | ksmtllntmdrilyesqrqEgrisfymtnygegtvgsaaaldntdlvfgareagvlmy |
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| − | kekvlklyksmtllntmdrilyesqrEgrisfymtnygegtvgsaaal |
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| + | rdyplelfmaqcygnisdlgkgrqpvygckerhfvtissplatqaTpqavgaayaakr |
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| − | dntdlvfgareagvlmyrdyplelfmaqcygnisdlgkgrqpvygcke |
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| + | ananrvvicyfgegaasegdahagfnfaatlecYpiiffcrnngyaistptseqyrgd |
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| − | rhfvtissplatqTpqavgaayaakrananrvvicyfgegaasegdah |
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| + | giaargpgygimsirvdgndvfavynatRkearrravaenqpflieaTmtyrigstdh |
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| − | agfnfaatleYpiiffcrnngyaistptseqyrgdgiaargpgygims |
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| + | piVsrlrhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpnSpnllfsdvyqemp |
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| − | irvdgndvfavynaRkearrravaenqpflieTmtyrigstdhpVsrl |
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| + | aqlrkqqeslarHhlqtygehypldhfdK |
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| − | rhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpSpnllfsdvyq |
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| + | |||
| − | empaqlrkqqeslaHhlqtygehypldhfdK |
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posmap: |
posmap: |
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Revision as of 13:46, 20 June 2012
Scwrl
Sequence extraction from pdb-file:
/opt/SS12-Practical/scripts/repairPDB 2bfd_A.ent -chain A -seq
sequence mutated: kpqfpgasaefidklefiqpnSvisgipiyrvmIdrqgqiinpsedphlpkekvlkly ksmtllntmdrilyesqrqEgrisfymtnygegtvgsaaaldntdlvfgareagvlmy rdyplelfmaqcygnisdlgkgrqpvygckerhfvtissplatqaTpqavgaayaakr ananrvvicyfgegaasegdahagfnfaatlecYpiiffcrnngyaistptseqyrgd giaargpgygimsirvdgndvfavynatRkearrravaenqpflieaTmtyrigstdh piVsrlrhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpnSpnllfsdvyqemp aqlrkqqeslarHhlqtygehypldhfdK
posmap:
| snp-pos | pdb-pos-mapping |
| N71S | N21S |
| M82I | M32I |
| Q125E | Q75E |
| I213T | I158T |
| C258Y | C203Y |
| T310R | T255R |
| A328T | A273T |
| I361V | I285V |
| N404S | N326S |
| R429H | R351H |
