Difference between revisions of "PsiBlast in Big80 (PKU)"
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(Created page with "PSSM of PAH of the SNP-sites Last position-specific scoring matrix computed, weighted observed percentages rounded down, inf…") |
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Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts |
Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts |
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Revision as of 13:56, 15 June 2012
PSSM of PAH of the SNP-sites
Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts
A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V
76 E 0 0 1 2 -1 2 4 -2 1 -5 -4 0 -2 -5 -3 0 1 -6 -3 -3 8 6 6 9 1 9 30 3 3 0 1 5 1 0 1 6 8 0 1 2 0.48 inf
87 S -1 1 1 0 1 0 -1 -2 1 1 0 0 2 -1 0 -1 -1 4 0 0 5 8 6 5 3 5 4 3 3 8 9 5 5 3 4 5 4 5 3 7 0.08 inf
158 R 0 1 1 -1 -2 1 1 0 -1 -2 -2 1 1 1 1 1 1 -2 -1 -2 8 8 8 0 0 8 8 8 0 0 1 8 8 8 8 8 8 0 0 0 0.14 inf
172 Q 0 0 0 0 2 1 0 0 1 0 0 0 1 0 -2 0 0 -3 -1 0 6 6 6 6 6 6 6 6 6 6 6 6 6 6 0 6 6 0 0 6 0.03 inf
243 R 0 5 -3 -4 -1 0 -1 -3 -2 -1 -2 -1 -2 -3 -4 0 -1 -4 1 4 7 30 0 0 1 5 3 1 1 1 3 3 0 0 0 7 2 0 4 30 0.51 inf
255 L -3 -4 -4 -4 0 -4 -4 -4 -3 1 3 -4 3 6 -4 -3 -1 -2 2 -1 1 0 0 0 2 0 1 1 0 9 30 0 8 35 0 1 4 0 6 1 0.74 inf
276 M -2 0 1 4 -3 0 1 0 0 -2 0 0 0 0 -2 -1 -1 -3 -1 -1 1 3 7 31 0 1 12 6 2 0 10 6 4 4 1 3 1 0 2 6 0.24 inf
322 A 3 1 -2 -2 -2 1 -1 0 -2 -1 -2 0 0 -2 -1 2 0 -3 -2 -1 43 7 0 0 0 7 2 6 0 3 2 3 2 1 1 16 3 0 0 3 0.27 inf
337 G 0 -1 3 3 -3 1 0 0 1 -2 -2 0 -2 -4 2 -1 -1 -4 -3 -2 6 3 22 18 0 6 5 8 5 1 5 6 0 0 13 1 1 0 0 2 0.32 inf
408 R -1 5 -1 1 -4 0 -1 -3 0 -4 -1 4 -3 -4 -3 -2 -1 -4 -3 -3 4 42 2 7 0 2 2 1 3 0 7 23 0 0 0 1 4 0 0 1 0.74 inf
K Lambda Standard Ungapped 0.1380 0.3205 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1490 0.3176 PSI Gapped 0.0456 0.2670
