Difference between revisions of "Fabry:Sequence-based mutation analysis/Journal"

From Bioinformatikpedia
Line 13: Line 13:
 
OUT: SNP_secStruc.txt, SNP_secStruc.wiki
 
OUT: SNP_secStruc.txt, SNP_secStruc.wiki
 
perl compare_seq_struc.pl
 
perl compare_seq_struc.pl
  +
  +
== Substitution matrices ==
  +
IN: pickedSNPsNOINFO.txt, BLOSUM62.csv, PAM250.csv<br>
  +
OUT: SNP_substMatr.txt, SNP_substMatr.wiki
  +
perl subst.pl
   
 
[[Category: Fabry Disease 2012]]
 
[[Category: Fabry Disease 2012]]

Revision as of 22:13, 12 June 2012

Fabry Disease » Sequence-based mutation analysis » Journal


INSERT IMPORTANT AND INTELLIGENT STUFF RIGHT HERE

Amino acid properties

IN: aa_properties.txt, resMass.txt, pickedSNPsNOINFO.txt
OUT: SNP_aaProps.txt, SNP_aaProps.wiki

perl read_AAProp.pl

Location

IN: pickedSNPsNOINFO.txt, P06280.dssp.ss, P06280.reprof.ss, P06280.psipred.ss
OUT: SNP_secStruc.txt, SNP_secStruc.wiki

perl compare_seq_struc.pl

Substitution matrices

IN: pickedSNPsNOINFO.txt, BLOSUM62.csv, PAM250.csv
OUT: SNP_substMatr.txt, SNP_substMatr.wiki

perl subst.pl