Difference between revisions of "CD task5 protocol"
From Bioinformatikpedia
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| − | >gi|73622272|ref|NM_000049.2| Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA |
+ | >gi|73622272|ref|NM_000049.2| Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA |
| − | TTGTAACAGAAAATTAAAATATACTCCACTCAAGGGAATTCTGTACTTTGCCCTTTGGGTAAAGTCTCAT |
+ | TTGTAACAGAAAATTAAAATATACTCCACTCAAGGGAATTCTGTACTTTGCCCTTTGGGTAAAGTCTCAT |
| − | TTACATTTCTAAACCTTTCTTAAGAAAATCGAATTTCCTTTGATCTCTCTTCTGAATTGCAGAAATCAGA |
+ | TTACATTTCTAAACCTTTCTTAAGAAAATCGAATTTCCTTTGATCTCTCTTCTGAATTGCAGAAATCAGA |
| − | TAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTG |
+ | TAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTG |
| − | GAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGAT |
+ | GAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGAT |
| − | TCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATAT |
+ | TCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATAT |
| − | ATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCAT |
+ | ATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCAT |
| − | ATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACAT |
+ | ATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACAT |
| − | TATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAAC |
+ | TATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAAC |
| − | TTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTG |
+ | TTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTG |
| − | AGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCC |
+ | AGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCC |
| − | TCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGAT |
+ | TCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGAT |
| − | TTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGA |
+ | TTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGA |
| − | AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGA |
+ | AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGA |
| − | CTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGA |
+ | CTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGA |
| − | GACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGA |
+ | GACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGA |
| − | CAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTACAT |
+ | CAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTACAT |
| − | CTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCAACT |
+ | CTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCAACT |
| − | GCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAATAT |
+ | GCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAATAT |
| − | ATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGTTTA |
+ | ATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGTTTA |
| − | TTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTGAAA |
+ | TTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTGAAA |
| − | TAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA |
+ | TAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA |
*NM_001128085.1 (1368 bp) |
*NM_001128085.1 (1368 bp) |
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| − | >gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA |
+ | >gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA |
| − | GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC |
+ | GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC |
| − | AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT |
+ | AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT |
| − | TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA |
+ | TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA |
| − | GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA |
+ | GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA |
| − | TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC |
+ | TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC |
| − | CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA |
+ | CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA |
| − | CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT |
+ | CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT |
| − | AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA |
+ | AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA |
| − | TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG |
+ | TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG |
| − | TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT |
+ | TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT |
| − | GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG |
+ | GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG |
| − | AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA |
+ | AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA |
| − | AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC |
+ | AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC |
| − | GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA |
+ | GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA |
| − | AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA |
+ | AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA |
| − | CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA |
+ | CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA |
| − | ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA |
+ | ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA |
| − | TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT |
+ | TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT |
| − | TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG |
+ | TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG |
| − | AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA |
+ | AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA |
NCBI Reference Sequence Protein: |
NCBI Reference Sequence Protein: |
||
*NP_000040.1 |
*NP_000040.1 |
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| + | |||
| + | 1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk |
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| + | 61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts |
||
| + | 121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg |
||
| + | 181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia |
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| + | 241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk |
||
| + | 301 ltlnaksirc clh |
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| + | |||
| + | |||
*NP_001121557.1 |
*NP_001121557.1 |
||
| + | |||
| + | 1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk |
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| + | 61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts |
||
| + | 121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg |
||
| + | 181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia |
||
| + | 241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk |
||
| + | 301 ltlnaksirc clh |
||
Revision as of 19:08, 7 June 2012
General Information
Location : 17p13.3
Gene symbol: aspa
2 splice variants
NCBI Reference Sequence DNA:
- NM_000049.2 (1435 bp)
>gi|73622272|ref|NM_000049.2| Homo sapiens aspartoacylase (ASPA), transcript variant 1, mRNA TTGTAACAGAAAATTAAAATATACTCCACTCAAGGGAATTCTGTACTTTGCCCTTTGGGTAAAGTCTCAT TTACATTTCTAAACCTTTCTTAAGAAAATCGAATTTCCTTTGATCTCTCTTCTGAATTGCAGAAATCAGA TAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCTTTG GAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGAGAT TCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGATAT ATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGCCAT ATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGACAT TATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAATAAC TTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGATTG AGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGGTCC TCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTTGAT TTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAGAGA AAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCAAGA CTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGCGGA GACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAAAGA CAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTACAT CTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCAACT GCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAATAT ATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGTTTA TTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTGAAA TAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
- NM_001128085.1 (1368 bp)
>gi|189339201|ref|NM_001128085.1| Homo sapiens aspartoacylase (ASPA), transcript variant 2, mRNA GAAATGCTCTCCTTTTTCCTAATAAAGCTTTCCACAGAAGACAAACTCTGTACACAAAAAACAAGAAATC AGATAAAAACTACTTGGTGAAATGACTTCTTGTCACATTGCTGAAGAACATATACAAAAGGTTGCTATCT TTGGAGGAACCCATGGGAATGAGCTAACCGGAGTATTTCTGGTTAAGCATTGGCTAGAGAATGGCGCTGA GATTCAGAGAACAGGGCTGGAGGTAAAACCATTTATTACTAACCCCAGAGCAGTGAAGAAGTGTACCAGA TATATTGACTGTGACCTGAATCGCATTTTTGACCTTGAAAATCTTGGCAAAAAAATGTCAGAAGATTTGC CATATGAAGTGAGAAGGGCTCAAGAAATAAATCATTTATTTGGTCCAAAAGACAGTGAAGATTCCTATGA CATTATTTTTGACCTTCACAACACCACCTCTAACATGGGGTGCACTCTTATTCTTGAGGATTCCAGGAAT AACTTTTTAATTCAGATGTTTCATTACATTAAGACTTCTCTGGCTCCACTACCCTGCTACGTTTATCTGA TTGAGCATCCTTCCCTCAAATATGCGACCACTCGTTCCATAGCCAAGTATCCTGTGGGTATAGAAGTTGG TCCTCAGCCTCAAGGGGTTCTGAGAGCTGATATCTTGGATCAAATGAGAAAAATGATTAAACATGCTCTT GATTTTATACATCATTTCAATGAAGGAAAAGAATTTCCTCCCTGCGCCATTGAGGTCTATAAAATTATAG AGAAAGTTGATTACCCCCGGGATGAAAATGGAGAAATTGCTGCTATCATCCATCCTAATCTGCAGGATCA AGACTGGAAACCACTGCATCCTGGGGATCCCATGTTTTTAACTCTTGATGGGAAGACGATCCCACTGGGC GGAGACTGTACCGTGTACCCCGTGTTTGTGAATGAGGCCGCATATTACGAAAAGAAAGAAGCTTTTGCAA AGACAACTAAACTAACGCTCAATGCAAAAAGTATTCGCTGCTGTTTACATTAGAAATCACTTCCAGCTTA CATCTTACACGGTGTCTTACAAATTCTGCTAGTCTGTAAGCTCCTTAAGAGTAGGGTTGTGCCTTATTCA ACTGCATACATAGCTCCTAGCACAGTGCCTTATTCGGTAGGCATCTAAGCAAATTTCTTAAATTAATTAA TATATCTTTAAAGATATCATATTTTATGTATGTAGCTTATTCAAAGAAGTGTTTCCTATTTCTATATAGT TTATTATACATGATACTTGGGTAGCTCAACATTCTTAATAAACAGCCTTTGTATTCAGAATATAAAATTG AAATAGATATATATAAAGTTAAAAAAAAAAAAAAAAAA
NCBI Reference Sequence Protein:
- NP_000040.1
1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk 61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts 121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg 181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia 241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk 301 ltlnaksirc clh
- NP_001121557.1
1 mtschiaeeh iqkvaifggt hgneltgvfl vkhwlengae iqrtglevkp fitnpravkk 61 ctryidcdln rifdlenlgk kmsedlpyev rraqeinhlf gpkdsedsyd iifdlhntts 121 nmgctliled srnnfliqmf hyiktslapl pcyvyliehp slkyattrsi akypvgievg 181 pqpqgvlrad ildqmrkmik haldfihhfn egkefppcai evykiiekvd yprdengeia 241 aiihpnlqdq dwkplhpgdp mfltldgkti plggdctvyp vfvneaayye kkeafakttk 301 ltlnaksirc clh
