Difference between revisions of "Task 4: Homology-based structure prediction"
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===COMA=== |
===COMA=== |
Revision as of 14:37, 30 May 2012
More detailed information about the generation of the results can be found in the Task 4 Protocol.
Datasets
In order to generate a model for our protein we first need to find homologous structures on which we base our model on. For this task we use HHpred and COMA.
HHpred
PDB ID | e-Value | Identity | Similarity |
---|---|---|---|
>80% Sequence Identity | |||
2BFD | 1.2e-84 | 99% | 1.508 |
80-40% Sequence Identity | |||
1qs0_A | 1.1e-79 | 39% | 0.580 |
<30% Sequence Identity | |||
2ozl_A | 3.6e-71 | 27% | 0.403 |
2yic_A | 1.2e-55 | 14% | 0.116 |
2xt6_A | 2.9e-55 | 14% | 0.121 |
2jgd_A | 4e-55 | 14% | 0.099 |
2o1s_A | 2.1e-27 | 20% | 0.200 |
3kom_A | 2.4e-26 | 18% | 0.148 |
Unfortunately the HHpred search did not produce any hits with a sequence identity between 40% and 80%. For testing purposes we assume 1qs0_A to fit in that category.
COMA
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