Difference between revisions of "Fabry:Sequence-based analyses"

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(Undo revision 18614 by Rackersederj (Talk))
m (GOPET)
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{| style="border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000" id="Tab:GOPET"
 
{| style="border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000" id="Tab:GOPET"
 
! style="border-style: solid; border-width: 1px;" colspan="6"|Result for GOPET search
 
! style="border-style: solid; border-width: 1px;" colspan="6"|Result for GOPET search
  +
|- align="center"
|-
 
 
! style="border-style: solid; border-width: 1px"| GOid
 
! style="border-style: solid; border-width: 1px"| GOid
 
! style="border-style: solid; border-width: 1px"| Aspect
 
! style="border-style: solid; border-width: 1px"| Aspect
 
! style="border-style: solid; border-width: 1px"| Confidence
 
! style="border-style: solid; border-width: 1px"| Confidence
 
! style="border-style: solid; border-width: 1px"| GO term
 
! style="border-style: solid; border-width: 1px"| GO term
  +
|- align="center"
|-
 
  +
| style="border-style: solid; border-width: 1px"| GO:0016798
  +
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)
  +
| style="border-style: solid; border-width: 1px"| 98%
  +
| style="border-style: solid; border-width: 1px"| hydrolase activity acting on glycosyl bonds
  +
|- align="center"
  +
| style="border-style: solid; border-width: 1px"| GO:0016798
  +
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)
  +
| style="border-style: solid; border-width: 1px"| 98%
  +
| style="border-style: solid; border-width: 1px"| hydrolase activity acting on glycosyl bonds
  +
|- align="center"
  +
| style="border-style: solid; border-width: 1px"| GO:0016798
  +
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)
  +
| style="border-style: solid; border-width: 1px"| 98%
  +
| style="border-style: solid; border-width: 1px"| hydrolase activity acting on glycosyl bonds
  +
|- align="center"
  +
| style="border-style: solid; border-width: 1px"| GO:0016798
  +
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)
  +
| style="border-style: solid; border-width: 1px"| 98%
  +
| style="border-style: solid; border-width: 1px"| hydrolase activity acting on glycosyl bonds
  +
|- align="center"
 
| style="border-style: solid; border-width: 1px"| GO:0016798
 
| style="border-style: solid; border-width: 1px"| GO:0016798
 
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)
 
| style="border-style: solid; border-width: 1px"| Molecular Function Ontology (F)

Revision as of 17:52, 8 May 2012

The following analyses were performed on the basis of the α-Galactosidase A sequence.

Secondary structure

Disorder

Transmembrane helices

Signal peptides

GO terms

GOPET

Searching the GOPET annotation tool with the AGAL_HUMAN sequence revealed 5 GOIds, which are displayed in <xr id="Tab:GOPET"/>..

Result for GOPET search
GOid Aspect Confidence GO term
GO:0016798 Molecular Function Ontology (F) 98% hydrolase activity acting on glycosyl bonds
GO:0016798 Molecular Function Ontology (F) 98% hydrolase activity acting on glycosyl bonds
GO:0016798 Molecular Function Ontology (F) 98% hydrolase activity acting on glycosyl bonds
GO:0016798 Molecular Function Ontology (F) 98% hydrolase activity acting on glycosyl bonds
GO:0016798 Molecular Function Ontology (F) 98% hydrolase activity acting on glycosyl bonds

ProtFun2.0

Pfam