Difference between revisions of "Sequence Alignments TSD"
From Bioinformatikpedia
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===PSI-Blast=== |
===PSI-Blast=== |
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| + | <!-- <figtable id="tbl:tsd_types_overview"> --> |
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| + | {| class="wikitable", style="width:50%; border-collapse: collapse; border-style: solid; border-width:0px; border-color: #000" |
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| + | |- |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |Iterations |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | 2 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |2 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |E-value |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" | 0.002 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10E-10 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |0.002 |
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| + | ! style="text-align:left; border-style: solid; border-width: 0 0 2px 0" |10E-10 |
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| + | |- |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | Runtime |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | |
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| + | | style="border-style: solid; border-width: 0 0 0 0" |No. hits |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | |
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| + | | style="border-style: solid; border-width: 0 0 0 0" | |
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| + | |} |
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| + | '''Table 1''': Different performances of PSI-Blast. |
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| + | <!-- </figtable> --> |
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===HHBlits=== |
===HHBlits=== |
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Revision as of 18:24, 1 May 2012
I heard you like citations!
"We’re sorry. It’s not us. It’s the monster. The bank isn’t like a man."
"Yes, but the bank is only made of men."
"No, you’re wrong there—quite wrong there. The bank is something else than men. It happens that every man in a bank hates what the bank does, and yet the bank does it. The bank is something more than men, I tell you. It’s the monster. Men made it, but they can’t control it."
Steinbeck - Grapes of Wrath
Test
I will ref in the text like so <xr id="fig:tsd_2gjx"/>.
<figure id="fig:tsd_2gjx">
Figure 2: Shown is Hex A with the alpha subunit in red and beta subunit in blue. Figure has been rendered in pymol based on PDB entry 2gjx
</figure>
Sequence searches
Blast
PSI-Blast
| Iterations | 2 | 2 | 10 | 10 |
|---|---|---|---|---|
| E-value | 0.002 | 10E-10 | 0.002 | 10E-10 |
| Runtime | ||||
| No. hits |
Table 1: Different performances of PSI-Blast.
