Difference between revisions of "Supplementary data normal mode glucocerebrosidase"

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(→‎Nomad-Ref)
(→‎Nomad-Ref)
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|[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px|Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|Elastic Network - Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|cRMS Plot - Mode 1]]||[[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|Elastic Network - Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|cRMS Plot - Mode 2]]||[[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|Elastic Network - Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|cRMS Plot - Mode 3]]||[[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|Mode 4']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|Elastic Network - Mode 4]]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|Elastic Network - Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|Elastic network - Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|cRMS Plot - Mode 6]]
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|[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px]]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|'''Figure 45b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|'''Figure 45c''']]||[[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|'''Figure 46a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|'''Figure 46b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|'''Figure 46c''']]||[[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|'''Figure 47a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|'''Figure 47b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|'''Figure 47c''']]||[[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|'''Figure 48a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|'''Figure 48b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|'''Figure 48c''']]||[[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|'''Figure 49a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|'''Figure 49b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|'''Figure 49c''']]||[[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|'''Figure 50a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|'''Figure 50b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|'''Figure 50c''']]
  
 
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Revision as of 15:07, 18 August 2011

This site provides additional data obtained in the normal mode analysis of glucocerebrosidase with different tools.


Anisotropic Network Model

Mode 6 Mode 7 Mode 8 Mode 9 Mode 10
Figure 26: Normal Mode 6 calculated with ANM
Figure 27: Normal Mode 7 calculated with ANM
Figure 28: Normal Mode 8 calculated with ANM
Figure 29: Normal Mode 9 calculated with ANM
Figure 30: Normal Mode 10 calculated with ANM
Inter Distance Analysis
Figure 31a: Distance Matrix

Figure 31b: Deformation Energy

Overall energy: 107191.169783064
Figure 32a: Distance Matrix

Figure 32b: Deformation Energy

Overall energy: 112430.078797944
Figure 33a: Distance Matrix

Figure 33b: Deformation Energy

Overall energy: 138939.176046648
Figure 34a: Distance Matrix

Figure 34b: Deformation Energy

Overall energy: 156195.358655472
Figure 35a: Distance Matrix

Figure 35b: Deformation Energy

Overall energy: 154660.33882932
B-factors/mode fluctuations
Figure 36: B-factors/mode fluctuations
Figure 37: B-factors/mode fluctuations
Figure 38: B-factors/mode fluctuations
Figure 39: B-factors/mode fluctuations
Figure 40: B-factors/mode fluctuations

Nomad-Ref

The following six modes show the rigid body motions calculated with Nomad-Ref.

Mode 1

Elastic Network - Mode 1

cRMS Plot - Mode 1
Mode 2

Elastic Network - Mode 2

cRMS Plot - Mode 2
Mode 3

Elastic Network - Mode 3

cRMS Plot - Mode 3
Mode 4'

Elastic Network - Mode 4

cRMS Plot - Mode 4
Mode 5

Elastic Network - Mode 5

cRMS Plot - Mode 4
Mode 6

Elastic network - Mode 6

cRMS Plot - Mode 6
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