Difference between revisions of "Supplementary data normal mode glucocerebrosidase"

From Bioinformatikpedia
(→‎Anisotropic Network Model)
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|[[File:anm_glucocerebrosidase_temp11.png |thumb|center|150px|'''Figure 41''']]||[[File:anm_glucocerebrosidase_temp12.png |thumb|center|150px|'''Figure 42''']]||[[File:anm_glucocerebrosidase_temp21.png |thumb|center|150px|'''Figure 43''']]||[[File:anm_glucocerebrosidase_temp22.png |thumb|center|150px|'''Figure 44''']]
  
|[[File:anm_glucocerebrosidase_temp11.png |thumb|center|150px|'''Figure 41''']]||[[File:anm_glucocerebrosidase_temp12.png |thumb|center|150px|'''Figure 42''']]||[[File:anm_glucocerebrosidase_temp21.png |thumb|center|150px|'''Figure 43''']]||[[File:anm_glucocerebrosidase_temp22.png |thumb|center|150px|'''Figure 44''']]
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== Nomad-Ref ==
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{| border="1" style="text-align:center; border-spacing:0" cellpadding="2" cellspacing="3" align = "center"
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|-
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! Mode 1
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! Mode 2
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! Mode 3
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! Mode 4
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! Mode 5
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! Mode 6
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|[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px|'''Figure 45a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|'''Figure 45b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|'''Figure 45c''']]||
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[[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|'''Figure 46a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|'''Figure 46b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|'''Figure 46c''']]||
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[[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|'''Figure 47a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|'''Figure 47b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|'''Figure 47c''']]||
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[[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|'''Figure 48a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|'''Figure 48b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|'''Figure 48c''']]||
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[[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|'''Figure 49a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|'''Figure 49b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|'''Figure 49c''']]||
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[[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|'''Figure 50a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|'''Figure 50b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|'''Figure 50c''']]
 
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Revision as of 05:59, 17 August 2011

This site provides additional data obtained in the normal mode analysis of glucocerebrosidase with different tools.


Anisotropic Network Model

Mode 6 Mode 7 Mode 8 Mode 9 Mode 10
Figure 26: Normal Mode 6 calculated with ANM
Figure 27: Normal Mode 7 calculated with ANM
Figure 28: Normal Mode 8 calculated with ANM
Figure 29: Normal Mode 9 calculated with ANM
Figure 30: Normal Mode 10 calculated with ANM
Inter Distance Analysis
Figure 31a: Distance Matrix

Figure 31b: Deformation Energy

Overall energy: 107191.169783064
Figure 32a: Distance Matrix

Figure 32b: Deformation Energy

Overall energy: 112430.078797944
Figure 33a: Distance Matrix

Figure 33b: Deformation Energy

Overall energy: 138939.176046648
Figure 34a: Distance Matrix

Figure 34b: Deformation Energy

Overall energy: 156195.358655472
Figure 35a: Distance Matrix

Figure 35b: Deformation Energy

Overall energy: 154660.33882932
B-factors/mode fluctuations
Figure 36: B-factors/mode fluctuations
Figure 37: B-factors/mode fluctuations
Figure 38: B-factors/mode fluctuations
Figure 39: B-factors/mode fluctuations
Figure 40: B-factors/mode fluctuations
Cα anisotropic temperature factors as ellipsoids
purely computational refined by experimental b-factors
Rastep Povscript Rastep Povscript
Figure 41
Figure 42
Figure 43
Figure 44


Nomad-Ref

Mode 1 Mode 2 Mode 3 Mode 4 Mode 5 Mode 6
Figure 45a

Figure 45b

Figure 45c
Figure 46a

Figure 46b

Figure 46c
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Figure 47a

Figure 47b

Figure 47c
||
Figure 48a

Figure 48b

Figure 48c
||
Figure 49a

Figure 49b

Figure 49c
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Figure 50a

Figure 50b

Figure 50c
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