Difference between revisions of "Reference Alignment BCKDHA"
From Bioinformatikpedia
(→Alignment NP000700.1 and Uniprot) |
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== Alignment NP000700.1 and Uniprot == |
== Alignment NP000700.1 and Uniprot == |
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== Alignment NP000700.1 and NP_064543.3 == |
== Alignment NP000700.1 and NP_064543.3 == |
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== Alignment NM_000709.3 NP000700.1 (translated) == |
== Alignment NM_000709.3 NP000700.1 (translated) == |
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Latest revision as of 00:29, 19 June 2011
Alignment NP000700.1 and Uniprot
######################################## # Program: needle # Rundate: Sat 18 Jun 2011 15:40:24 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20110618-154022-0862-15396676-pg.asequence # -bsequence emboss_needle-I20110618-154022-0862-15396676-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: ODBA_HUMAN # 2: NP_000700.1 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 445 # Identity: 445/445 (100.0%) # Similarity: 445/445 (100.0%) # Gaps: 0/445 ( 0.0%) # Score: 2348.0 # # #======================================= ODBA_HUMAN 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50 ODBA_HUMAN 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100 ODBA_HUMAN 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150 ODBA_HUMAN 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200 ODBA_HUMAN 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250 ODBA_HUMAN 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300 ODBA_HUMAN 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350 ODBA_HUMAN 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400 |||||||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400 ODBA_HUMAN 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445 ||||||||||||||||||||||||||||||||||||||||||||| NP_000700.1 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445 #--------------------------------------- #---------------------------------------
Alignment NP000700.1 and NP_064543.3
# Program: needle # Rundate: Sat 18 Jun 2011 15:33:48 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20110618-153347-0476-45685691-pg.asequence # -bsequence emboss_needle-I20110618-153347-0476-45685691-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: NP_064543.3 # 2: NP_000700.1 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 497 # Identity: 49/497 ( 9.9%) # Similarity: 86/497 (17.3%) # Gaps: 314/497 (63.2%) # Score: 30.0 # # #======================================= NP_064543.3 1 -------------------------------------------------- 0 NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50 NP_064543.3 1 -------------------------------------------------- 0 NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100 NP_064543.3 1 -----------------------------------MEEETHTDAKIRAEN 15 .||.||. NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHV-------- 142 NP_064543.3 16 GTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK 65 |||:.|. :|.::.|.|..|.|. NP_000700.1 143 ---------------------------GSAAALD-NTDLVFGQYREAGVL 164 NP_064543.3 66 VSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE-------AVVLG 108 :.::. .||:.:....|......|.|:..:...|: :..|. NP_000700.1 165 MYRDY----PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 210 NP_064543.3 109 TLHPRTSITVVLQVVSDAGSLLACCL--NAACMALVDAGVPMRA-LFCGV 155 |..|:..........::|..::.|.. .||......||....| |.|.: NP_000700.1 211 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 260 NP_064543.3 156 ACALDSDGTLVLDPTSKQEK----EAR----AVLTFALDSVERKLLMSST 197 .....::|..:..|||:|.: .|| .:::..:|..:...:.::| NP_000700.1 261 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNAT 310 NP_064543.3 198 KGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR---YSKS--------- 235 | :....|.|.:| .|..|::..| :|.| NP_000700.1 311 K---------EARRRAVAENQ---PFLIEAMTYRIGHHSTSDDSSAYRSV 348 NP_064543.3 236 -------------------------------------------------- 235 NP_000700.1 349 DEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 398 NP_064543.3 236 ----------------------------------------------- 235 NP_000700.1 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445 #--------------------------------------- #---------------------------------------
Alignment NM_000709.3 NP000700.1 (translated)
######################################## # Program: needle # Rundate: Sat 18 Jun 2011 15:42:31 # Commandline: needle # -auto # -stdout # -asequence emboss_needle-I20110618-154230-0254-14289745-pg.asequence # -bsequence emboss_needle-I20110618-154230-0254-14289745-pg.bsequence # -datafile EBLOSUM62 # -gapopen 10.0 # -gapextend 0.5 # -endopen 10.0 # -endextend 0.5 # -aformat3 pair # -sprotein1 # -sprotein2 # Align_format: pair # Report_file: stdout ######################################## #======================================= # # Aligned_sequences: 2 # 1: NP_000700.1 # 2: EMBOSS_001 # Matrix: EBLOSUM62 # Gap_penalty: 10.0 # Extend_penalty: 0.5 # # Length: 458 # Identity: 445/458 (97.2%) # Similarity: 445/458 (97.2%) # Gaps: 13/458 ( 2.8%) # Score: 2348.0 # # #======================================= NP_000700.1 1 -------------MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 37 ||||||||||||||||||||||||||||||||||||| EMBOSS_001 1 LRECRTAEWLLAKMAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 50 NP_000700.1 38 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 87 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 51 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 100 NP_000700.1 88 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 137 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 101 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 150 NP_000700.1 138 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 187 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 151 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 200 NP_000700.1 188 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 201 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 250 NP_000700.1 238 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 287 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 251 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 300 NP_000700.1 288 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 337 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 301 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 350 NP_000700.1 338 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 387 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 351 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 400 NP_000700.1 388 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 437 |||||||||||||||||||||||||||||||||||||||||||||||||| EMBOSS_001 401 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 450 NP_000700.1 438 YPLDHFDK 445 |||||||| EMBOSS_001 451 YPLDHFDK 458 #--------------------------------------- #---------------------------------------