Difference between revisions of "Homology-modelling HEXA/swissmodel ali"
From Bioinformatikpedia
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3BC9_A|PDBID|CHAIN|SEQUENCE E 598 |
3BC9_A|PDBID|CHAIN|SEQUENCE E 598 |
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Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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<br><br> |
<br><br> |
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. : . : *.. |
. : . : *.. |
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| − | <br><br> |
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Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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<br><br> |
<br><br> |
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| − | Alignment of HEXA_HUMAN and |
+ | Alignment of HEXA_HUMAN and 3HN3: |
| − | CLUSTAL 2.1 multiple sequence alignment |
+ | CLUSTAL 2.1 multiple sequence alignment |
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN -MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYD 49 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWE 50 |
|
| − | + | .. : :. .: . . .**.: :*. . :* . : :: |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN VS-SAAQPGCSVLDEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVV 97 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE SGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV 100 |
|
| − | . |
+ | . :. * * ::: * :* * . * . : :* * : .. ** |
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN SVVTPG-------CNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLE 140 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITI 150 |
|
| − | + | : .. * : *** .* * . *: .: . ** |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN TFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTL 190 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE AINNTLTPTTLPPGTIQY--LTDTSKYPKGYFVQNTYFDFFNYAGLQR-- 196 |
|
| − | + | ::.: : :: . *: : * .::*: :: :* .:: :.: |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVK 240 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE SVLLYTTPTTYIDDITVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAE 246 |
|
| − | + | .*: *.. ..: .:. .*. :* . : . * .. *.: |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN EVIEYARLRGIRVLAEFDTPGHTLSWG---PGIPGLLTPCYSGSEPSGTF 287 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE NKVVAN---GTGTQGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSL 293 |
|
| − | : |
+ | : : * . .::..** :* * *. * . .. :: |
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN GPVNPSLNNTYEFMSTFFLEVSSVFP--DFYLH----------------- 318 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE GPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDW 343 |
|
| − | + | ***. . . : :. . : . :: **:* |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN ------------LGGDEVDFTCWKSNPEIQDFMRKK---------GFGED 347 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLA 393 |
|
| − | + | **.: . : : *: :: : *.* |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN FKQLES-----FYIQTLLDIVSSYG--KGYVVWQEVFDNKVKIQPD--TI 388 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYL 443 |
|
| − | + | : *: . .::*.: ::* . *:*. . : :::. : |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN IQVWREDIPVNYMKELELVTKAGFRALLSAPWY--LNRISYGPDWKDFYI 436 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE KMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGH 493 |
|
| − | + | * . .:: : : :*:::.: * .**: : ** . ::*: |
|
| − | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN VEPLAFEGTPEQK-------ALVIG---GEACMWGEYVDNTNLVPRLWPR 476 |
| − | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQK 543 |
|
| + | :* : :: :.: : :* * : * : * . :... : : |
||
| + | |||
| + | sp|P06865|HEXA_HUMAN AGAVAERLWSN-----KLTSDLTFAYERLSHFRCELLRRG-------VQA 514 |
||
| + | 3HN3_A|PDBID|CHAIN|SEQUENCE SLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQR 593 |
||
| + | : :* : :..:* : : : :. * * |
||
| + | |||
| + | sp|P06865|HEXA_HUMAN QPLNVGFCEQEFEQT----- 529 |
||
| + | 3HN3_A|PDBID|CHAIN|SEQUENCE QPKSAAFLLRERYWKIANET 613 |
||
| + | ** ...* :* . |
||
| + | |||
| − | <br><br> |
||
Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
||
<br><br> |
<br><br> |
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Latest revision as of 14:46, 13 June 2011
Alignment of HEXA_HUMAN and 3BC9:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN --------------------------MTSSRLWFSLLLAAAFAGRATALW 24
3BC9_A|PDBID|CHAIN|SEQUENCE GCSNISEDVNNPNRSLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQL 50
: *: .::* : . .:
sp|P06865|HEXA_HUMAN PWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCS---------VLDEAF 65
3BC9_A|PDBID|CHAIN|SEQUENCE ALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLSYEVIDIYDNHL 100
. .: : ** : : * : : . : :* *. : *: :
sp|P06865|HEXA_HUMAN QRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVEN 115
3BC9_A|PDBID|CHAIN|SEQUENCE QGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWN 150
* * ::*.....:*: .**: : . . ..: * .: *
sp|P06865|HEXA_HUMAN YTLTINDDQCLLLSETVWG--ALRGLETFSQLVWKS----AEGTFFIN-- 157
3BC9_A|PDBID|CHAIN|SEQUENCE LLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGT 200
: . :** * :*: : :: : : * * :
sp|P06865|HEXA_HUMAN -KTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLV 206
3BC9_A|PDBID|CHAIN|SEQUENCE VRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSR 250
:*: .: : *... : :.::*: * : ::. :
sp|P06865|HEXA_HUMAN DDPSFPYESFT-FPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 255
3BC9_A|PDBID|CHAIN|SEQUENCE DKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFD 300
*.*. :::* * *:*.*. .* . * .: :*:: * ::
sp|P06865|HEXA_HUMAN EFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFF 305
3BC9_A|PDBID|CHAIN|SEQUENCE E-KSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDG-FR 348
* .: . * .*. . *... .. . . : *. :* . *
sp|P06865|HEXA_HUMAN LEVSSVFPDFYLHLGGDEVDFTCWK-----SNPEIQDFMRKKGFGEDFK- 349
3BC9_A|PDBID|CHAIN|SEQUENCE LDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGN 398
*:. . : ::. . *: :. : .:. ::*. *** : .
sp|P06865|HEXA_HUMAN ----------------QLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKI 383
3BC9_A|PDBID|CHAIN|SEQUENCE PDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDT 448
*:. *: * : . ** .* :: .
sp|P06865|HEXA_HUMAN QPDTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKD 433
3BC9_A|PDBID|CHAIN|SEQUENCE DRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KL 497
: * . *. *. :: :*: .:. * * *
sp|P06865|HEXA_HUMAN FYIVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAER 483
3BC9_A|PDBID|CHAIN|SEQUENCE LTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVLMISDGTSGNV 547
: . *: * . . : : . : * :. * *: .:
sp|P06865|HEXA_HUMAN LWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT---- 529
3BC9_A|PDBID|CHAIN|SEQUENCE AGKINSRQPDTEFYDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPV 597
. : . * *: .*:: .: . ::* .*:: .
sp|P06865|HEXA_HUMAN -
3BC9_A|PDBID|CHAIN|SEQUENCE E 598
Back to [Homology Modelling]
Alignment of HEXA_HUMAN and 3CUI:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYDV 50
3CUI_A|PDBID|CHAIN|SEQUENCE --------ATTLKEAADG------------AGRDFGFALDPN-------- 22
: * * * * :.* **
sp|P06865|HEXA_HUMAN SSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVV 100
3CUI_A|PDBID|CHAIN|SEQUENCE --------RLSEAQYKAIADSEFN-------------LVVAENAMKWDAT 51
: : :: * *. .: :*.: ...
sp|P06865|HEXA_HUMAN TPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSA 150
3CUI_A|PDBID|CHAIN|SEQUENCE EPSQNSFS------------------------FGAGDRVASYAADTGKEL 77
*. *.:. :** : ::: . *.
sp|P06865|HEXA_HUMAN EGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNV 200
3CUI_A|PDBID|CHAIN|SEQUENCE YGHTLVWHSQLPDWAKN----------------------LNGSAFESAMV 105
* :: :::: *:.: *: *::. *
sp|P06865|HEXA_HUMAN FHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRG 250
3CUI_A|PDBID|CHAIN|SEQUENCE NHVTKVAD------------------------------------------ 113
* * *
sp|P06865|HEXA_HUMAN IRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEF 300
3CUI_A|PDBID|CHAIN|SEQUENCE -------HFEGKVASWD-----VVNEAFADGGGRRQDSAFQQKLGN--GY 149
. *:. **. ::. .::.. ...: .*.* :
sp|P06865|HEXA_HUMAN MSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQ 350
3CUI_A|PDBID|CHAIN|SEQUENCE IETAFRAARAADPTAKLCINDYNVEGINAKSNS-LYDLVKD--FKARGVP 196
:.* * . :. * * :.. :*: ***. : *:::. *
sp|P06865|HEXA_HUMAN LESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNY 400
3CUI_A|PDBID|CHAIN|SEQUENCE LDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVR---------------- 230
*:.. :*: * : . *. *.. * *.::
sp|P06865|HEXA_HUMAN MKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKA 450
3CUI_A|PDBID|CHAIN|SEQUENCE ITELDIRMRTPS----------DATKLATQAADYKKVVQACMQVTRCQGV 270
:.**:: :: : . ..: *: * .:: * * .
sp|P06865|HEXA_HUMAN LVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERL 500
3CUI_A|PDBID|CHAIN|SEQUENCE TVWG--------ITDKYSWVPDVFP--GEGAALVWD--------ASYAKK 302
* * .*: . ** ::* * * :*. :* :
sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529
3CUI_A|PDBID|CHAIN|SEQUENCE PAYAAVMEAFGAS---------------- 315
. : . : *..
Back to [Homology Modelling]
Alignment of HEXA_HUMAN and 3HN3:
CLUSTAL 2.1 multiple sequence alignment
sp|P06865|HEXA_HUMAN -MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYD 49
3HN3_A|PDBID|CHAIN|SEQUENCE LGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWE 50
.. : :. .: . . .**.: :*. . :* . : ::
sp|P06865|HEXA_HUMAN VS-SAAQPGCSVLDEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVV 97
3HN3_A|PDBID|CHAIN|SEQUENCE SGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV 100
. :. * * ::: * :* * . * . : :* * : .. **
sp|P06865|HEXA_HUMAN SVVTPG-------CNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLE 140
3HN3_A|PDBID|CHAIN|SEQUENCE LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITI 150
: .. * : *** .* * . *: .: . **
sp|P06865|HEXA_HUMAN TFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTL 190
3HN3_A|PDBID|CHAIN|SEQUENCE AINNTLTPTTLPPGTIQY--LTDTSKYPKGYFVQNTYFDFFNYAGLQR-- 196
::.: : :: . *: : * .::*: :: :* .:: :.:
sp|P06865|HEXA_HUMAN DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVK 240
3HN3_A|PDBID|CHAIN|SEQUENCE SVLLYTTPTTYIDDITVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAE 246
.*: *.. ..: .:. .*. :* . : . * .. *.:
sp|P06865|HEXA_HUMAN EVIEYARLRGIRVLAEFDTPGHTLSWG---PGIPGLLTPCYSGSEPSGTF 287
3HN3_A|PDBID|CHAIN|SEQUENCE NKVVAN---GTGTQGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSL 293
: : * . .::..** :* * *. * . .. ::
sp|P06865|HEXA_HUMAN GPVNPSLNNTYEFMSTFFLEVSSVFP--DFYLH----------------- 318
3HN3_A|PDBID|CHAIN|SEQUENCE GPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDW 343
***. . . : :. . : . :: **:*
sp|P06865|HEXA_HUMAN ------------LGGDEVDFTCWKSNPEIQDFMRKK---------GFGED 347
3HN3_A|PDBID|CHAIN|SEQUENCE PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLA 393
**.: . : : *: :: : *.*
sp|P06865|HEXA_HUMAN FKQLES-----FYIQTLLDIVSSYG--KGYVVWQEVFDNKVKIQPD--TI 388
3HN3_A|PDBID|CHAIN|SEQUENCE LPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYL 443
: *: . .::*.: ::* . *:*. . : :::. :
sp|P06865|HEXA_HUMAN IQVWREDIPVNYMKELELVTKAGFRALLSAPWY--LNRISYGPDWKDFYI 436
3HN3_A|PDBID|CHAIN|SEQUENCE KMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGH 493
* . .:: : : :*:::.: * .**: : ** . ::*:
sp|P06865|HEXA_HUMAN VEPLAFEGTPEQK-------ALVIG---GEACMWGEYVDNTNLVPRLWPR 476
3HN3_A|PDBID|CHAIN|SEQUENCE LELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQK 543
:* : :: :.: : :* * : * : * . :... : :
sp|P06865|HEXA_HUMAN AGAVAERLWSN-----KLTSDLTFAYERLSHFRCELLRRG-------VQA 514
3HN3_A|PDBID|CHAIN|SEQUENCE SLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQR 593
: :* : :..:* : : : :. * *
sp|P06865|HEXA_HUMAN QPLNVGFCEQEFEQT----- 529
3HN3_A|PDBID|CHAIN|SEQUENCE QPKSAAFLLRERYWKIANET 613
** ...* :* .
Back to [Homology Modelling]
