Difference between revisions of "Homology-modelling HEXA/swissmodel ali"
From Bioinformatikpedia
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3BC9_A|PDBID|CHAIN|SEQUENCE E 598 |
3BC9_A|PDBID|CHAIN|SEQUENCE E 598 |
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+ | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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Alignment of HEXA_HUMAN and 3CUI: |
Alignment of HEXA_HUMAN and 3CUI: |
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+ | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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<br><br> |
<br><br> |
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+ | Alignment of HEXA_HUMAN and 3HN3: |
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+ | CLUSTAL 2.1 multiple sequence alignment |
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− | Alignment of HEXA_HUMAN and 3LUT: |
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− | |||
− | CLUSTAL 2.1 multiple sequence alignment |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN -MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYD 49 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWE 50 |
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− | + | .. : :. .: . . .**.: :*. . :* . : :: |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN VS-SAAQPGCSVLDEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVV 97 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE SGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV 100 |
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− | . |
+ | . :. * * ::: * :* * . * . : :* * : .. ** |
− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN SVVTPG-------CNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLE 140 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITI 150 |
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− | + | : .. * : *** .* * . *: .: . ** |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN TFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTL 190 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE AINNTLTPTTLPPGTIQY--LTDTSKYPKGYFVQNTYFDFFNYAGLQR-- 196 |
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− | + | ::.: : :: . *: : * .::*: :: :* .:: :.: |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVK 240 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE SVLLYTTPTTYIDDITVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAE 246 |
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− | + | .*: *.. ..: .:. .*. :* . : . * .. *.: |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN EVIEYARLRGIRVLAEFDTPGHTLSWG---PGIPGLLTPCYSGSEPSGTF 287 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE NKVVAN---GTGTQGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSL 293 |
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− | : |
+ | : : * . .::..** :* * *. * . .. :: |
− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN GPVNPSLNNTYEFMSTFFLEVSSVFP--DFYLH----------------- 318 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE GPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDW 343 |
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− | + | ***. . . : :. . : . :: **:* |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN ------------LGGDEVDFTCWKSNPEIQDFMRKK---------GFGED 347 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLA 393 |
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− | + | **.: . : : *: :: : *.* |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN FKQLES-----FYIQTLLDIVSSYG--KGYVVWQEVFDNKVKIQPD--TI 388 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYL 443 |
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− | + | : *: . .::*.: ::* . *:*. . : :::. : |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN IQVWREDIPVNYMKELELVTKAGFRALLSAPWY--LNRISYGPDWKDFYI 436 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE KMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGH 493 |
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− | + | * . .:: : : :*:::.: * .**: : ** . ::*: |
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− | sp|P06865|HEXA_HUMAN |
+ | sp|P06865|HEXA_HUMAN VEPLAFEGTPEQK-------ALVIG---GEACMWGEYVDNTNLVPRLWPR 476 |
− | + | 3HN3_A|PDBID|CHAIN|SEQUENCE LELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQK 543 |
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+ | :* : :: :.: : :* * : * : * . :... : : |
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+ | |||
+ | sp|P06865|HEXA_HUMAN AGAVAERLWSN-----KLTSDLTFAYERLSHFRCELLRRG-------VQA 514 |
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+ | 3HN3_A|PDBID|CHAIN|SEQUENCE SLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQR 593 |
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+ | : :* : :..:* : : : :. * * |
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+ | |||
+ | sp|P06865|HEXA_HUMAN QPLNVGFCEQEFEQT----- 529 |
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+ | 3HN3_A|PDBID|CHAIN|SEQUENCE QPKSAAFLLRERYWKIANET 613 |
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+ | ** ...* :* . |
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+ | |||
+ | |||
+ | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology Modelling]] |
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+ | <br><br> |
Latest revision as of 14:46, 13 June 2011
Alignment of HEXA_HUMAN and 3BC9:
CLUSTAL 2.1 multiple sequence alignment sp|P06865|HEXA_HUMAN --------------------------MTSSRLWFSLLLAAAFAGRATALW 24 3BC9_A|PDBID|CHAIN|SEQUENCE GCSNISEDVNNPNRSLFLIESEPSTGASVSKNLTEIILIFSNDINKVSQL 50 : *: .::* : . .: sp|P06865|HEXA_HUMAN PWPQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCS---------VLDEAF 65 3BC9_A|PDBID|CHAIN|SEQUENCE ALTDLITDSDIQGIDYNIEGNKVIINNFSLEPTCNYRLSYEVIDIYDNHL 100 . .: : ** : : * : : . : :* *. : *: : sp|P06865|HEXA_HUMAN QRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVEN 115 3BC9_A|PDBID|CHAIN|SEQUENCE QGYIEFLVNQSNYPQIPDQEVNHTILQAFYWEMNTGEYATEHPEEANLWN 150 * * ::*.....:*: .**: : . . ..: * .: * sp|P06865|HEXA_HUMAN YTLTINDDQCLLLSETVWG--ALRGLETFSQLVWKS----AEGTFFIN-- 157 3BC9_A|PDBID|CHAIN|SEQUENCE LLAERAPELAEAGFTAVWLPPANKGMAGIHDVGYGTYDLWDLGEFDQKGT 200 : . :** * :*: : :: : : * * : sp|P06865|HEXA_HUMAN -KTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLV 206 3BC9_A|PDBID|CHAIN|SEQUENCE VRTKYGTKGELENAIDALHNNDIKVYFDAVLNHRMGADYAETVLLDENSR 250 :*: .: : *... : :.::*: * : ::. : sp|P06865|HEXA_HUMAN DDPSFPYESFT-FPELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLA 255 3BC9_A|PDBID|CHAIN|SEQUENCE DKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCFDGTDWDDYSKESGKYLFD 300 *.*. :::* * *:*.*. .* . * .: :*:: * :: sp|P06865|HEXA_HUMAN EFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFF 305 3BC9_A|PDBID|CHAIN|SEQUENCE E-KSWDWTYNWDEDYLMGADVDYENEAVQNDVIDWGQWIINNIDFDG-FR 348 * .: . * .*. . *... .. . . : *. :* . * sp|P06865|HEXA_HUMAN LEVSSVFPDFYLHLGGDEVDFTCWK-----SNPEIQDFMRKKGFGEDFK- 349 3BC9_A|PDBID|CHAIN|SEQUENCE LDAVKHIDYRFIDKWMSAVQNSSNRDVFFVGEAWVEDVDDLKGFLDTVGN 398 *:. . : ::. . *: :. : .:. ::*. *** : . sp|P06865|HEXA_HUMAN ----------------QLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKI 383 3BC9_A|PDBID|CHAIN|SEQUENCE PDLRVFDFPLRSFFVDMLNGAYMADLRNAGLVNSPGYENRAVTFVDNHDT 448 *:. *: * : . ** .* :: . sp|P06865|HEXA_HUMAN QPDTIIQVWREDIPVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKD 433 3BC9_A|PDBID|CHAIN|SEQUENCE DRDEGSYTVSIYSRKYQAYAYILTRAEGVPTVYWKDYYIWEMKEGLD-KL 497 : * . *. *. :: :*: .:. * * * sp|P06865|HEXA_HUMAN FYIVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVAER 483 3BC9_A|PDBID|CHAIN|SEQUENCE LTARRYYAYGPGYEVDNNDADIYSYVRSGFPDVAGDGLVLMISDGTSGNV 547 : . *: * . . : : . : * :. * *: .: sp|P06865|HEXA_HUMAN LWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEFEQT---- 529 3BC9_A|PDBID|CHAIN|SEQUENCE AGKINSRQPDTEFYDLTGHIKEHVTTDSEGYGNFKVIKSEDKGWSIWVPV 597 . : . * *: .*:: .: . ::* .*:: . sp|P06865|HEXA_HUMAN - 3BC9_A|PDBID|CHAIN|SEQUENCE E 598
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Alignment of HEXA_HUMAN and 3CUI:
CLUSTAL 2.1 multiple sequence alignment sp|P06865|HEXA_HUMAN MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYDV 50 3CUI_A|PDBID|CHAIN|SEQUENCE --------ATTLKEAADG------------AGRDFGFALDPN-------- 22 : * * * * :.* ** sp|P06865|HEXA_HUMAN SSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVV 100 3CUI_A|PDBID|CHAIN|SEQUENCE --------RLSEAQYKAIADSEFN-------------LVVAENAMKWDAT 51 : : :: * *. .: :*.: ... sp|P06865|HEXA_HUMAN TPGCNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLETFSQLVWKSA 150 3CUI_A|PDBID|CHAIN|SEQUENCE EPSQNSFS------------------------FGAGDRVASYAADTGKEL 77 *. *.:. :** : ::: . *. sp|P06865|HEXA_HUMAN EGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTLDVMAYNKLNV 200 3CUI_A|PDBID|CHAIN|SEQUENCE YGHTLVWHSQLPDWAKN----------------------LNGSAFESAMV 105 * :: :::: *:.: *: *::. * sp|P06865|HEXA_HUMAN FHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYARLRG 250 3CUI_A|PDBID|CHAIN|SEQUENCE NHVTKVAD------------------------------------------ 113 * * * sp|P06865|HEXA_HUMAN IRVLAEFDTPGHTLSWGPGIPGLLTPCYSGSEPSGTFGPVNPSLNNTYEF 300 3CUI_A|PDBID|CHAIN|SEQUENCE -------HFEGKVASWD-----VVNEAFADGGGRRQDSAFQQKLGN--GY 149 . *:. **. ::. .::.. ...: .*.* : sp|P06865|HEXA_HUMAN MSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQDFMRKKGFGEDFKQ 350 3CUI_A|PDBID|CHAIN|SEQUENCE IETAFRAARAADPTAKLCINDYNVEGINAKSNS-LYDLVKD--FKARGVP 196 :.* * . :. * * :.. :*: ***. : *:::. * sp|P06865|HEXA_HUMAN LESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNY 400 3CUI_A|PDBID|CHAIN|SEQUENCE LDCVGFQSHLIVGQVPGDFRQNLQRFADLGVDVR---------------- 230 *:.. :*: * : . *. *.. * *.:: sp|P06865|HEXA_HUMAN MKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYIVEPLAFEGTPEQKA 450 3CUI_A|PDBID|CHAIN|SEQUENCE ITELDIRMRTPS----------DATKLATQAADYKKVVQACMQVTRCQGV 270 :.**:: :: : . ..: *: * .:: * * . sp|P06865|HEXA_HUMAN LVIGGEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERL 500 3CUI_A|PDBID|CHAIN|SEQUENCE TVWG--------ITDKYSWVPDVFP--GEGAALVWD--------ASYAKK 302 * * .*: . ** ::* * * :*. :* : sp|P06865|HEXA_HUMAN SHFRCELLRRGVQAQPLNVGFCEQEFEQT 529 3CUI_A|PDBID|CHAIN|SEQUENCE PAYAAVMEAFGAS---------------- 315 . : . : *..
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Alignment of HEXA_HUMAN and 3HN3:
CLUSTAL 2.1 multiple sequence alignment sp|P06865|HEXA_HUMAN -MTSSRLWFSLLLAAAFAGRATALWPWPQNFQTSDQRYVLYPNNFQFQYD 49 3HN3_A|PDBID|CHAIN|SEQUENCE LGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWE 50 .. : :. .: . . .**.: :*. . :* . : :: sp|P06865|HEXA_HUMAN VS-SAAQPGCSVLDEAFQRYRDLLFGSGSWPR-PYLTGKRHTLEKNVLVV 97 3HN3_A|PDBID|CHAIN|SEQUENCE SGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV 100 . :. * * ::: * :* * . * . : :* * : .. ** sp|P06865|HEXA_HUMAN SVVTPG-------CNQLPTLESVENYTLTINDDQCLLLSETVWGALRGLE 140 3HN3_A|PDBID|CHAIN|SEQUENCE LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITI 150 : .. * : *** .* * . *: .: . ** sp|P06865|HEXA_HUMAN TFSQLVWKSAEGTFFINKTEIEDFPRFPHRGLLLDTSRHYLPLSSILDTL 190 3HN3_A|PDBID|CHAIN|SEQUENCE AINNTLTPTTLPPGTIQY--LTDTSKYPKGYFVQNTYFDFFNYAGLQR-- 196 ::.: : :: . *: : * .::*: :: :* .:: :.: sp|P06865|HEXA_HUMAN DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVTHIYTAQDVK 240 3HN3_A|PDBID|CHAIN|SEQUENCE SVLLYTTPTTYIDDITVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAE 246 .*: *.. ..: .:. .*. :* . : . * .. *.: sp|P06865|HEXA_HUMAN EVIEYARLRGIRVLAEFDTPGHTLSWG---PGIPGLLTPCYSGSEPSGTF 287 3HN3_A|PDBID|CHAIN|SEQUENCE NKVVAN---GTGTQGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSL 293 : : * . .::..** :* * *. * . .. :: sp|P06865|HEXA_HUMAN GPVNPSLNNTYEFMSTFFLEVSSVFP--DFYLH----------------- 318 3HN3_A|PDBID|CHAIN|SEQUENCE GPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGFDW 343 ***. . . : :. . : . :: **:* sp|P06865|HEXA_HUMAN ------------LGGDEVDFTCWKSNPEIQDFMRKK---------GFGED 347 3HN3_A|PDBID|CHAIN|SEQUENCE PLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLA 393 **.: . : : *: :: : *.* sp|P06865|HEXA_HUMAN FKQLES-----FYIQTLLDIVSSYG--KGYVVWQEVFDNKVKIQPD--TI 388 3HN3_A|PDBID|CHAIN|SEQUENCE LPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYL 443 : *: . .::*.: ::* . *:*. . : :::. : sp|P06865|HEXA_HUMAN IQVWREDIPVNYMKELELVTKAGFRALLSAPWY--LNRISYGPDWKDFYI 436 3HN3_A|PDBID|CHAIN|SEQUENCE KMVIAHTKSLDPSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGH 493 * . .:: : : :*:::.: * .**: : ** . ::*: sp|P06865|HEXA_HUMAN VEPLAFEGTPEQK-------ALVIG---GEACMWGEYVDNTNLVPRLWPR 476 3HN3_A|PDBID|CHAIN|SEQUENCE LELIQLQLATQFENWYKKYQKPIIQSEYGAETIAGFHQDPPLMFTEEYQK 543 :* : :: :.: : :* * : * : * . :... : : sp|P06865|HEXA_HUMAN AGAVAERLWSN-----KLTSDLTFAYERLSHFRCELLRRG-------VQA 514 3HN3_A|PDBID|CHAIN|SEQUENCE SLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTRVLGNKKGIFTRQR 593 : :* : :..:* : : : :. * * sp|P06865|HEXA_HUMAN QPLNVGFCEQEFEQT----- 529 3HN3_A|PDBID|CHAIN|SEQUENCE QPKSAAFLLRERYWKIANET 613 ** ...* :* .
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