Difference between revisions of "Supplementary data normal mode glucocerebrosidase"
From Bioinformatikpedia
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! Mode 10 |
! Mode 10 |
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− | |[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px| |
+ | |[[File:anm_glucocerebrosidase_mode0006.gif |thumb|center|150px|Normal Mode 6 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0007.gif |thumb|center|150px|Normal Mode 7 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0008.gif |thumb|center|150px|Normal Mode 8 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0009.gif |thumb|center|150px|Normal Mode 9 calculated with ANM]] ||[[File:anm_glucocerebrosidase_mode0010.gif |thumb|center|150px|Normal Mode 10 calculated with ANM]] |
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|colspan="10"|'''Inter Distance Analysis''' |
|colspan="10"|'''Inter Distance Analysis''' |
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− | |[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px| |
+ | |[[File:anm_glucocerebrosidase_distmapscalar6.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode6.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 107191.169783064 || [[File:anm_glucocerebrosidase_distmapscalar7.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode7.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 112430.078797944 || [[File:anm_glucocerebrosidase_distmapscalar8.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode8.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 138939.176046648 || [[File:anm_glucocerebrosidase_distmapscalar9.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode9.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 156195.358655472 || [[File:anm_glucocerebrosidase_distmapscalar10.png |thumb|center|150px|Distance Matrix]]<br/>[[File:anm_glucocerebrosidase_mode10.png |thumb|center|150px|Deformation Energy]]<br/>Overall energy: 154660.33882932 |
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|colspan="10"|'''B-factors/mode fluctuations''' |
|colspan="10"|'''B-factors/mode fluctuations''' |
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− | | [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px| |
+ | | [[File:anm_glucocerebrosidase_bfmode6.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode7.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode8.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode9.png |thumb|center|150px|B-factors/mode fluctuations]] || [[File:anm_glucocerebrosidase_bfmode10.png |thumb|center|150px|B-factors/mode fluctuations]] |
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== Nomad-Ref == |
== Nomad-Ref == |
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+ | The following six modes show the rigid body motions calculated with Nomad-Ref. |
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− | {| border="1" style="text-align:center; border-spacing:0" cellpadding="2" cellspacing="3" align = "center" |
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+ | {| border="0" style="text-align:center; border-spacing:0" cellpadding="2" cellspacing="3" align = "center" |
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+ | |[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px|Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|Elastic Network - Mode 1]]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|cRMS Plot - Mode 1]]||[[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|Elastic Network - Mode 2]]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|cRMS Plot - Mode 2]]||[[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|Elastic Network - Mode 3]]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|cRMS Plot - Mode 3]]||[[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|Mode 4']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|Elastic Network - Mode 4]]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|Elastic Network - Mode 5]]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|cRMS Plot - Mode 4]]||[[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|Elastic network - Mode 6]]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|cRMS Plot - Mode 6]] |
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− | ! Mode 1 |
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− | ! Mode 2 |
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− | ! Mode 3 |
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− | ! Mode 4 |
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− | ! Mode 5 |
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− | ! Mode 6 |
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− | |[[File:Nomad_ref_mode1_glucocerebrosidase.gif |thumb|center|150px|'''Figure 45a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode01.png |thumb|center|150px|'''Figure 45b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode1.png |thumb|center|150px|'''Figure 45c''']]|| |
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− | [[File:Nomad_ref_mode2_glucocerebrosidase.gif |thumb|center|150px|'''Figure 46a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode02.png |thumb|center|150px|'''Figure 46b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode2.png |thumb|center|150px|'''Figure 46c''']]|| |
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− | [[File:Nomad_ref_mode3_glucocerebrosidase.gif |thumb|center|150px|'''Figure 47a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode03.png |thumb|center|150px|'''Figure 47b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode3.png |thumb|center|150px|'''Figure 47c''']]|| |
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− | [[File:Nomad_ref_mode4_glucocerebrosidase.gif |thumb|center|150px|'''Figure 48a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode04.png |thumb|center|150px|'''Figure 48b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode4.png |thumb|center|150px|'''Figure 48c''']]|| |
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− | [[File:Nomad_ref_mode5_glucocerebrosidase.gif |thumb|center|150px|'''Figure 49a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode05.png |thumb|center|150px|'''Figure 49b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode5.png |thumb|center|150px|'''Figure 49c''']]|| |
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− | [[File:Nomad_ref_mode6_glucocerebrosidase.gif |thumb|center|150px|'''Figure 50a''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode06.png |thumb|center|150px|'''Figure 50b''']]<br/>[[File:anm_glucocerebrosidase_nomad_mode6.png |thumb|center|150px|'''Figure 50c''']] |
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Latest revision as of 09:27, 19 August 2011
This site provides additional data obtained in the normal mode analysis of glucocerebrosidase with different tools.
Anisotropic Network Model
Mode 6 | Mode 7 | Mode 8 | Mode 9 | Mode 10 | |||||
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Inter Distance Analysis | |||||||||
Overall energy: 107191.169783064 |
Overall energy: 112430.078797944 |
Overall energy: 138939.176046648 |
Overall energy: 156195.358655472 |
Overall energy: 154660.33882932 | |||||
B-factors/mode fluctuations | |||||||||
Nomad-Ref
The following six modes show the rigid body motions calculated with Nomad-Ref.