Difference between revisions of "Normal Mode Analysis of ARSA"
From Bioinformatikpedia
(→oGNM – Gaussian network model) |
(→oGNM – Gaussian network model) |
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[[File:ognm_fluctall.png |thumb|center|300px|Fluctuations of mode 7-11]] |
[[File:ognm_fluctall.png |thumb|center|300px|Fluctuations of mode 7-11]] |
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| + | [[File:ognm_corall.png |thumb|center|300px|Correlation of mode 1-20]] |
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| + | [[File:ognm_cor711.png |thumb|center|300px|Correlation of mode 7-11]] |
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== NOMAD-Ref == |
== NOMAD-Ref == |
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Revision as of 16:30, 25 July 2011
Contents
WEBnm@
We used | http://www.lcdf.org/gifsicle/ to generate the animated gifs:
gifsicle --delay=5 --loop --colors 256 *.gif > anim.gif
| Mode | Motion | Vecors | Displacement |
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| mode 8 | 
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| mode 9 | 
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| mode 10 | 
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| mode 11 | 
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| mode 12 | 
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ElNemo
| Mode | Pymol animation | picture 1 from ElNemo | picture 2 from ElNemo | picture 3 from ElNemo | Fluctuations |
| Mode 7 | 
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| Mode 8 | 
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| Mode 9 | 
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| Mode 10 | 
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| Mode 11 | 
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Anisotropic Network Model web server
for file in *.png; do convert "$file" "$(basename $file .png).gif";done
| mode 1 | mode 2 | mode 3 | mode 4 | mode 5 | |
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oGNM – Gaussian network model
| mode 7 | mode 8 | mode 9 | mode 10 | mode 11 | |
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File:Ognm corall.png
Correlation of mode 1-20
File:Ognm cor711.png
Correlation of mode 7-11
NOMAD-Ref
NMA of ARSA
| mode 7 | mode 8 | mode 9 | mode 10 | mode 11 | |
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All-atom NMA of 1BPT
| Temperature | mode | mode 8 | mode 9 | mode 10 | mode 11 |
| 600K | 
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| 2000K | 
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