Difference between revisions of "Normal Mode Analysis of ARSA"
From Bioinformatikpedia
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=== NMA of ARSA === |
=== NMA of ARSA === |
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| + | {| border="1" style="text-align:center; border-spacing:0;" |
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| + | |mode 7 |
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| + | |mode 8 |
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| + | |mode 9 |
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| + | |mode 10 |
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| + | |mode 11 |
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| + | |- |
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| + | |''Motion'' |
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| + | |[[Image:nomad_arsa1.gif|200px]] |
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| + | |[[Image:nomad_arsa2.gif|200px]] |
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| + | |[[Image:nomad_arsa3.gif|200px]] |
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| + | |[[Image:nomad_arsa4.gif|200px]] |
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| + | |[[Image:nomad_arsa5.gif|200px]] |
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| + | |- |
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| + | |''Distance'' |
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| + | |[[Image:nomaddist_arsa1.gif|200px]] |
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| + | |[[Image:nomaddist_arsa2.png|200px]] |
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| + | |[[Image:nomaddist_arsa3.png|200px]] |
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| + | |[[Image:nomaddist_arsa4.png|200px]] |
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| + | |[[Image:nomaddist_arsa5.png|200px]] |
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| + | |} |
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=== All-atom NMA of 1BPT === |
=== All-atom NMA of 1BPT === |
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Revision as of 13:59, 25 July 2011
Contents
WEBnm@
We used | http://www.lcdf.org/gifsicle/ to generate the animated gifs:
gifsicle --delay=5 --loop --colors 256 *.gif > anim.gif
| Mode | Motion | Vecors | Displacement |
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ElNemo
| Mode | Pymol animation | picture 1 from ElNemo | picture 2 from ElNemo | picture 3 from ElNemo | Fluctuations |
| Mode 7 | 
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| Mode 11 | 
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Anisotropic Network Model web server
for file in *.png; do convert "$file" "$(basename $file .png).gif";done
| mode 1 | mode 2 | mode 3 | mode 4 | mode 5 | |
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oGNM – Gaussian network model
NOMAD-Ref
NMA of ARSA
| mode 7 | mode 8 | mode 9 | mode 10 | mode 11 | |
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| Distance | 200px | 
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All-atom NMA of 1BPT
| Temperature | mode | mode 8 | mode 9 | mode 10 | mode 11 |
| 600K | 
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| 2000K | 
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