Difference between revisions of "Reference Alignment BCKDHA"
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== Alignment NP000700.1 and Uniprot == |
== Alignment NP000700.1 and Uniprot == |
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== Alignment NP000700.1 and NP_064543.3 == |
== Alignment NP000700.1 and NP_064543.3 == |
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# Program: needle |
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== Alignment NM_000709.3 NP000700.1 (translated) == |
== Alignment NM_000709.3 NP000700.1 (translated) == |
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######################################## |
######################################## |
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# Program: needle |
# Program: needle |
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Latest revision as of 00:29, 19 June 2011
Alignment NP000700.1 and Uniprot
########################################
# Program: needle
# Rundate: Sat 18 Jun 2011 15:40:24
# Commandline: needle
# -auto
# -stdout
# -asequence emboss_needle-I20110618-154022-0862-15396676-pg.asequence
# -bsequence emboss_needle-I20110618-154022-0862-15396676-pg.bsequence
# -datafile EBLOSUM62
# -gapopen 10.0
# -gapextend 0.5
# -endopen 10.0
# -endextend 0.5
# -aformat3 pair
# -sprotein1
# -sprotein2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: ODBA_HUMAN
# 2: NP_000700.1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 445
# Identity: 445/445 (100.0%)
# Similarity: 445/445 (100.0%)
# Gaps: 0/445 ( 0.0%)
# Score: 2348.0
#
#
#=======================================
ODBA_HUMAN 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50
ODBA_HUMAN 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100
ODBA_HUMAN 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDN 150
ODBA_HUMAN 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 151 TDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKER 200
ODBA_HUMAN 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 201 HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 250
ODBA_HUMAN 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 251 NFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDG 300
ODBA_HUMAN 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 301 NDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDE 350
ODBA_HUMAN 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400
||||||||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 351 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERK 400
ODBA_HUMAN 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445
|||||||||||||||||||||||||||||||||||||||||||||
NP_000700.1 401 PKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445
#---------------------------------------
#---------------------------------------
Alignment NP000700.1 and NP_064543.3
# Program: needle
# Rundate: Sat 18 Jun 2011 15:33:48
# Commandline: needle
# -auto
# -stdout
# -asequence emboss_needle-I20110618-153347-0476-45685691-pg.asequence
# -bsequence emboss_needle-I20110618-153347-0476-45685691-pg.bsequence
# -datafile EBLOSUM62
# -gapopen 10.0
# -gapextend 0.5
# -endopen 10.0
# -endextend 0.5
# -aformat3 pair
# -sprotein1
# -sprotein2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: NP_064543.3
# 2: NP_000700.1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 497
# Identity: 49/497 ( 9.9%)
# Similarity: 86/497 (17.3%)
# Gaps: 314/497 (63.2%)
# Score: 30.0
#
#
#=======================================
NP_064543.3 1 -------------------------------------------------- 0
NP_000700.1 1 MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSHPPRQQQQFSSLDD 50
NP_064543.3 1 -------------------------------------------------- 0
NP_000700.1 51 KPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKE 100
NP_064543.3 1 -----------------------------------MEEETHTDAKIRAEN 15
.||.||.
NP_000700.1 101 KVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHV-------- 142
NP_064543.3 16 GTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK 65
|||:.|. :|.::.|.|..|.|.
NP_000700.1 143 ---------------------------GSAAALD-NTDLVFGQYREAGVL 164
NP_064543.3 66 VSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE-------AVVLG 108
:.::. .||:.:....|......|.|:..:...|: :..|.
NP_000700.1 165 MYRDY----PLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLA 210
NP_064543.3 109 TLHPRTSITVVLQVVSDAGSLLACCL--NAACMALVDAGVPMRA-LFCGV 155
|..|:..........::|..::.|.. .||......||....| |.|.:
NP_000700.1 211 TQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPI 260
NP_064543.3 156 ACALDSDGTLVLDPTSKQEK----EAR----AVLTFALDSVERKLLMSST 197
.....::|..:..|||:|.: .|| .:::..:|..:...:.::|
NP_000700.1 261 IFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNAT 310
NP_064543.3 198 KGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR---YSKS--------- 235
| :....|.|.:| .|..|::..| :|.|
NP_000700.1 311 K---------EARRRAVAENQ---PFLIEAMTYRIGHHSTSDDSSAYRSV 348
NP_064543.3 236 -------------------------------------------------- 235
NP_000700.1 349 DEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 398
NP_064543.3 236 ----------------------------------------------- 235
NP_000700.1 399 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHFDK 445
#---------------------------------------
#---------------------------------------
Alignment NM_000709.3 NP000700.1 (translated)
########################################
# Program: needle
# Rundate: Sat 18 Jun 2011 15:42:31
# Commandline: needle
# -auto
# -stdout
# -asequence emboss_needle-I20110618-154230-0254-14289745-pg.asequence
# -bsequence emboss_needle-I20110618-154230-0254-14289745-pg.bsequence
# -datafile EBLOSUM62
# -gapopen 10.0
# -gapextend 0.5
# -endopen 10.0
# -endextend 0.5
# -aformat3 pair
# -sprotein1
# -sprotein2
# Align_format: pair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: NP_000700.1
# 2: EMBOSS_001
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity: 445/458 (97.2%)
# Similarity: 445/458 (97.2%)
# Gaps: 13/458 ( 2.8%)
# Score: 2348.0
#
#
#=======================================
NP_000700.1 1 -------------MAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 37
|||||||||||||||||||||||||||||||||||||
EMBOSS_001 1 LRECRTAEWLLAKMAVAIAAARVWRLNRGLSQAALLLLRQPGARGLARSH 50
NP_000700.1 38 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 87
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 51 PPRQQQQFSSLDDKPQFPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQ 100
NP_000700.1 88 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 137
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 101 IINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGE 150
NP_000700.1 138 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 187
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 151 EGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGK 200
NP_000700.1 188 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 237
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 201 GRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFG 250
NP_000700.1 238 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 287
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 251 EGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAAR 300
NP_000700.1 288 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 337
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 301 GPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHS 350
NP_000700.1 338 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 387
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 351 TSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSR 400
NP_000700.1 388 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 437
||||||||||||||||||||||||||||||||||||||||||||||||||
EMBOSS_001 401 RKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEH 450
NP_000700.1 438 YPLDHFDK 445
||||||||
EMBOSS_001 451 YPLDHFDK 458
#---------------------------------------
#---------------------------------------
