Difference between revisions of "Glucocerebrosidase mapping snps"

From Bioinformatikpedia
(Missense Mutations)
(Sequence)
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==== Sequence ====
 
==== Sequence ====
  +
 
<code>
 
<code>
  +
>sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3<br/><br/>
 
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSR<span style="color:#00bfff">Y</span><span style="color:#00bfff">E</span><span style="color:#00bfff">S</span><br/>TRSGR<span style="color:#00bfff">R</span>MELSM<span style="color:#00bfff">G</span>PIQANH<span style="color:#00bfff">T</span>GTGLLLTLQPEQKFQKVKGFGGAMTDAA<span style="color:#00bfff">A</span>LNILALSPPAQNLLLKSYFSEEGIGYNII<span style="color:#00bfff">R</span>V<span style="color:#00bfff">P</span>M<br/>ASCDFSI<span style="color:#00bfff">R</span>TY<span style="color:#00bfff">T</span>YADTPDDFQLHNFSLPEEDTKLKI<span style="color:#00bfff">P</span>LIHRALQLAQRPVS<span style="color:#00bfff">L</span>LAS<span style="color:#00bfff">P</span>WTS<span style="color:#00bfff">P</span>TW<span style="color:#00bfff">L</span>KTNG<span style="color:#00bfff">A</span>VNGKG<span style="color:#00bfff">S</span>L<span style="color:#00bfff">K</span>GQPGDI<br/>YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR<br/>LLLPHWAKVVLTDPEAA<span style="color:#00bfff">K</span>YVH<span style="color:#00bfff">G</span>IAVHW<span style="color:#00bfff">Y</span>LDFLAPAKATLG<span style="color:#00bfff">E</span>THRLFPNTMLFASEACVGSKFW<span style="color:#00bfff">E</span>QSVRLGSWDRGMQYSHS<br/>II<span style="color:#00bfff">T</span>N<span style="color:#00bfff">L</span>LYHVV<span style="color:#00bfff">G</span>WTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTF<span style="color:#00bfff">Y</span>KQPMFYHLGHFS<span style="color:#00bfff">K</span>FIPEGS<span style="color:#00bfff">Q</span>RVGLVASQKNDLDAV<br/>ALMHPDGSAVVV<span style="color:#00bfff">V</span>LNRSSKDVPLTIKDPAV<span style="color:#00bfff">G</span>FLETISPGYSIHTYLWR<span style="color:#00bfff">R</span>Q
 
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSR<span style="color:#00bfff">Y</span><span style="color:#00bfff">E</span><span style="color:#00bfff">S</span><br/>TRSGR<span style="color:#00bfff">R</span>MELSM<span style="color:#00bfff">G</span>PIQANH<span style="color:#00bfff">T</span>GTGLLLTLQPEQKFQKVKGFGGAMTDAA<span style="color:#00bfff">A</span>LNILALSPPAQNLLLKSYFSEEGIGYNII<span style="color:#00bfff">R</span>V<span style="color:#00bfff">P</span>M<br/>ASCDFSI<span style="color:#00bfff">R</span>TY<span style="color:#00bfff">T</span>YADTPDDFQLHNFSLPEEDTKLKI<span style="color:#00bfff">P</span>LIHRALQLAQRPVS<span style="color:#00bfff">L</span>LAS<span style="color:#00bfff">P</span>WTS<span style="color:#00bfff">P</span>TW<span style="color:#00bfff">L</span>KTNG<span style="color:#00bfff">A</span>VNGKG<span style="color:#00bfff">S</span>L<span style="color:#00bfff">K</span>GQPGDI<br/>YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR<br/>LLLPHWAKVVLTDPEAA<span style="color:#00bfff">K</span>YVH<span style="color:#00bfff">G</span>IAVHW<span style="color:#00bfff">Y</span>LDFLAPAKATLG<span style="color:#00bfff">E</span>THRLFPNTMLFASEACVGSKFW<span style="color:#00bfff">E</span>QSVRLGSWDRGMQYSHS<br/>II<span style="color:#00bfff">T</span>N<span style="color:#00bfff">L</span>LYHVV<span style="color:#00bfff">G</span>WTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTF<span style="color:#00bfff">Y</span>KQPMFYHLGHFS<span style="color:#00bfff">K</span>FIPEGS<span style="color:#00bfff">Q</span>RVGLVASQKNDLDAV<br/>ALMHPDGSAVVV<span style="color:#00bfff">V</span>LNRSSKDVPLTIKDPAV<span style="color:#00bfff">G</span>FLETISPGYSIHTYLWR<span style="color:#00bfff">R</span>Q
 
<br/></code>
 
<br/></code>

Revision as of 13:57, 18 June 2011

General

HGMD

The HGMD is the Human Gene Mutation Database, which contains germline mutations that are linked to human diseases. There are several types of mutations:

  • missense/nonsense: codon codes for a different amino acid/premature stop codon
  • splicing: a mutation that causes splicing
  • regulatory: mutation affecting the regulation of gene expression
  • small/gross deletions: mutation that deletes residues
  • small/gross insertions: mutation that inserts residues
  • small indels: insertion or deletion (maybe not recognizable)
  • duplications: duplicated sequence pieces
  • complex rearrangements: part of the sequence is placed somewhere else
  • repeat variations: repeated varied parts of the sequence are placed somewhere else

dbSNP

The dbSNP is the Single Nucleotide Polymorphism Database by the NCBI together with the National Human Genome Research Institute (NHGRI), which was built up 1998. <ref>http://en.wikipedia.org/wiki/DbSNP</ref> It contains several types of mutations for 55 organisms including human:

  • SNPs (single nucleotide polymorphisms)
  • MNPs (multinucleotide polymorphisms)
  • small deletions
  • small insertions
  • small indels
  • short tandem repeats (STRs)

HGMD: Mutations for GBA

Overview

To get the different mutation types for the GBA gene, which is the interesting gene in Gaucher Disease, we searched at HMGD for GBA. As a result we got a list with the different types of mutations found for GBA:

mutation type number of mutations
missense/nonsense 236
splicing 13
regulatory 0
small deletions 23
small insertions 13
small indels 2
gross deletions 3
sross insertions/duplications 0
complex rearrangements 13
repeat variations 0
public total (HGMD Professional 2011.1 total) 303 (353)

The for our case interesting mutations are the missense/nonsense mutations, because they cause a change in the amino acid sequence. Such single point mutations seem to be responsible for Gaucher Disease, so we focus on them.

Missense/nonsense mutations given for GBA

In the following table is a detailed overview of the 236 missense/nonsense mutations for GBA:

Codon change Amino acid change Codon number
AAG-AGG Lys-Arg -27
TGGg-TGA Trp-Term -4
cGGC-AGC Gly-Ser 10
AGC-ATC Ser-Ile 12
gGTG-ATG Val-Met 15
gGTG-CTG Val-Leu 15
TGT-TCT Cys-Ser 16
tGAC-AAC Asp-Asn 24
tGGT-AGT Gly-Ser 35
cTTC-GTC Phe-Val 37
tGAG-AAG Glu-Lys 41
AGT-AAT Ser-Asn 42
ACA-ATA Thr-Ile 43
GGG-GAG Gly-Glu 46
gCGA-TGA Arg-Term 47
aCGG-TGG Arg-Trp 48
CGG-CAG Arg-Gln 48
CTA-CCA Leu-Pro 66
aCAG-TAG Gln-Term 73
gAAG-TAG Lys-Term 74
GTG-GCG Val-Ala 78
AAGg-AAC Lys-Asn 79
ATG-ACG Met-Thr 85
tGCT-ACT Ala-Thr 90
CTT-CGT Leu-Arg 105
TCG-TTG Ser-Leu 107
cTTC-GTC Phe-Val 109
tGAA-AAA Glu-Lys 111
GGA-GAA Gly-Glu 113
tAAC-GAC Asn-Asp 117
ATC-ACC Ile-Thr 119
ATC-AGC Ile-Ser 119
cCGG-TGG Arg-Trp 120
CGG-CAG Arg-Gln 120
GTA-GCA Val-Ala 121
aCCC-TCC Pro-Ser 122
CCC-CTC Pro-Leu 122
ATG-ACG Met-Thr 123
cATG-GTG Met-Val 123
GAC-GTC Asp-Val 127
cCGC-TGC Arg-Cys 131
CGC-CTC Arg-Leu 131
ACC-ATC Thr-Ile 134
cACC-CCC Thr-Pro 134
TATg-TAG Tyr-Term 135
GCA-GAA Ala-Glu 136
tGAT-CAT Asp-His 140
GAA-GCA Glu-Ala 152
AAGa-AAT Lys-Asn 157
cAAG-CAG Lys-Gln 157
aCCC-ACC Pro-Thr 159
CCC-CTC Pro-Leu 159
ATT-AAT Ile-Asn 161
ATT-AGT Ile-Ser 161
CAC-CCC His-Pro 162
cCGA-TGA Arg-Term 163
cCAG-TAG Gln-Term 169
CGT-CCT Arg-Pro 170
gCGT-TGT Arg-Cys 170
TCA-TGA Ser-Term 173
aCTC-TTC Leu-Phe 174
CTC-CCC Leu-Pro 174
GCC-GAC Ala-Asp 176
cCCC-TCC Pro-Ser 178
TGG-TAG Trp-Term 179
gACA-CCA Thr-Pro 180
aCCC-ACC Pro-Thr 182
CCC-CTC Pro-Leu 182
tTGG-CGG Trp-Arg 184
gCTC-TTC Leu-Phe 185
AAT-AGT Asn-Ser 188
AATg-AAG Asn-Lys 188
GGA-GTA Gly-Val 189
aGCG-ACG Ala-Thr 190
GCG-GAG Ala-Glu 190
GTG-GAG Val-Glu 191
GTG-GGG Val-Gly 191
GGG-GAG Gly-Glu 195
gGGG-TGG Gly-Trp 195
gTCA-CCA Ser-Pro 196
aCTC-TTC Leu-Phe 197
CTC-CCC Leu-Pro 197
AAG-ACG Lys-Thr 198
cAAG-GAG Lys-Glu 198
cGGA-AGA Gly-Arg 202
GGA-GAA Gly-Glu 202
TAC-TGC Tyr-Cys 205
cTGG-CGG Trp-Arg 209
GCC-GTC Ala-Val 210
aTAC-CAC Tyr-His 212
cTTT-ATT Phe-Ile 213
TTT-TGT Phe-Cys 213
gTTC-GTC Phe-Val 216
TTC-TAC Phe-Tyr 216
TAT-TGT Tyr-Cys 220
ACA-AGA Thr-Arg 231
GAAa-GAC Glu-Asp 233
tGAA-TAA Glu-Term 233
tTCT-CCT Ser-Pro 237
GGG-GTG Gly-Val 239
GGA-GTA Gly-Val 243
aTAC-CAC Tyr-His 244
CCC-CAC Pro-His 245
TTCa-TTA Phe-Leu 251
CATc-CAG His-Gln 255
CGA-CAA Arg-Gln 257
gCGA-TGA Arg-Term 257
TTCa-TTA Phe-Leu 259
ATT-ACT Ile-Thr 260
GGT-GAT Gly-Asp 265
CCT-CGT Pro-Arg 266
CCT-CTT Pro-Leu 266
tCCT-GCT Pro-Ala 266
AGT-AAT Ser-Asn 271
CTC-CCC Leu-Pro 279
aCGC-TGC Arg-Cys 285
CGC-CAC Arg-His 285
CCC-CTC Pro-Leu 289
aCTG-TTG Leu-Leu 296
AAA-ATA Lys-Ile 303
TAT-TGT Tyr-Cys 304
TATg-TAG Tyr-Term 304
tGTT-CTT Val-Leu 305
GCT-GTT Ala-Val 309
CAT-CGT His-Arg 311
TGGt-TGT Trp-Cys 312
tTGG-CGG Trp-Arg 312
gTAC-CAC Tyr-His 313
gGAC-CAC Asp-His 315
GCT-GAT Ala-Asp 318
tCCA-GCA Pro-Ala 319
ACC-ATC Thr-Ile 323
CTA-CAA Leu-Gln 324
CTA-CCA Leu-Pro 324
aGGG-AGG Gly-Arg 325
aGGG-TGG Gly-Trp 325
gGAG-AAG Glu-Lys 326
cCGC-TGC Arg-Cys 329
TTC-TCC Phe-Ser 331
CTC-CCC Leu-Pro 336
gGCC-ACC Ala-Thr 341
cTGT-CGT Cys-Arg 342
cTGT-GGT Cys-Gly 342
TGT-TAT Cys-Tyr 342
cTGG-GGG Trp-Gly 348
gGAG-AAG Glu-Lys 349
gCAG-TAG Gln-Term 350
tGTG-CTG Val-Leu 352
gCGG-GGG Arg-Gly 353
gCGG-TGG Arg-Trp 353
GGC-GAC Gly-Asp 355
TCC-TTC Ser-Phe 356
TGG-TAG Trp-Term 357
CGA-CAA Arg-Gln 359
tCGA-TGA Arg-Term 359
ATGc-ATA Met-Ile 361
TAC-TGC Tyr-Cys 363
AGC-AAC Ser-Asn 364
AGC-ACC Ser-Thr 364
cAGC-CGC Ser-Arg 364
AGC-AAC Ser-Asn 366
AGC-ACC Ser-Thr 366
cAGC-GGC Ser-Gly 366
ACG-ATG Thr-Met 369
AAC-AGC Asn-Ser 370
AACc-AAA Asn-Lys 370
cCTC-GTC Leu-Val 371
tGTG-TTG Val-Leu 375
cGGC-AGC Gly-Ser 377
cTGG-GGG Trp-Gly 378
TGG-TAG Trp-Term 378
cGAC-AAC Asp-Asn 380
cGAC-CAC Asp-His 380
GAC-GCC Asp-Ala 380
TGG-TAG Trp-Term 381
AACc-AAA Asn-Lys 382
CTT-CGT Leu-Arg 383
CTG-CCG Leu-Pro 385
CCC-CTC Pro-Leu 387
cGAA-TAA Glu-Term 388
GGA-GAA Gly-Glu 389
aGGA-AGA Gly-Arg 390
CCC-CTC Pro-Leu 391
AAT-ATT Asn-Ile 392
TGG-TTG Trp-Leu 393
tTGG-AGG Trp-Arg 393
gGTG-TTG Val-Leu 394
CGT-CCT Arg-Pro 395
gCGT-TGT Arg-Cys 395
AAC-ACC Asn-Thr 396
TTT-TCT Phe-Ser 397
tGTC-ATC Val-Ile 398
tGTC-CTC Val-Leu 398
tGTC-TTC Val-Phe 398
cGAC-AAC Asp-Asn 399
cGAC-TAC Asp-Tyr 399
CCC-CTC Pro-Leu 401
ATC-ACC Ile-Thr 402
cATC-TTC Ile-Phe 402
GAC-GGC Asp-Gly 409
GAC-GTC Asp-Val 409
gGAC-CAC Asp-His 409
gTTT-ATT Phe-Ile 411
tTAC-CAC Tyr-His 412
cAAA-CAA Lys-Gln 413
aCAG-TAG Gln-Term 414
CAG-CGG Gln-Arg 414
CCC-CGC Pro-Arg 415
cATG-GTG Met-Val 416
gTTC-GTC Phe-Val 417
TAC-TGC Tyr-Cys 418
GGC-GAC Gly-Asp 421
cAAG-GAG Lys-Glu 425
AGAg-AGT Arg-Ser 433
gAGA-GGA Arg-Gly 433
CTG-CCG Leu-Pro 444
CTG-CGG Leu-Arg 444
cGCA-CCA Ala-Pro 446
CAT-CGT His-Arg 451
tGCT-CCT Ala-Pro 456
cGTG-ATG Val-Met 460
CTA-CCA Leu-Pro 461
AAC-AGC Asn-Ser 462
AACc-AAG Asn-Lys 462
cCGC-TGC Arg-Cys 463
CGC-CAC Arg-His 463
CGC-CCC Arg-Pro 463
gGAT-TAT Asp-Tyr 474
gGGC-AGC Gly-Ser 478
CTG-CCG Leu-Pro 480
cTCC-CCC Ser-Pro 488
ATT-ACT Ile-Thr 489
ACC-ATC Thr-Ile 491
CGC-CAC Arg-His 496
tCGC-TGC Arg-Cys 496
CAG-CGG Gln-Arg 497

Sequence

Positions where mutations occur

>sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYES
TRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPM
ASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDI
YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHS
IITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAV
ALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ

Posistions for possible missense/nonsense mutations are marked with red.

Possible mutated amino acid residues

>sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3

MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYES
MEFSSPSREECPRPLSRVSIMAGSLTGLLLLQAVS!ASGARPCIPKSFSYISVMSVCNATYCNSFDPPTFPALSTVSRYKN
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVLCVCNATYCDSFDPPTFPALGTFSRYES
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYES

TRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPM
IRSE!WMELSMGPIQANHTGTGLPLTLQPE!!FQKANGFGGATTDAATLNILALSPPAQNLLRKLYVSKEEIGYDITWAST
TRSGRQMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNISQVLV
TRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPM

ASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDI
ASCVFSICTYI!EDTPHDFQLHNFSLPEADTKLNITLNP!ALQLA!PPV!FLDSS!PSTTRFKTSVTENGKEPFTGQPRDI
ASCDFSILTYPYADTPDDFQLHNFSLPEEDTKLQILLSHRALQLAQCPVSPLASPWTSLTWLKTKGEGNGKWSPEGQPEDI
ASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDI

YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
CHQTRVRHIVKVLDACAEHKLQFWAVRADNEPPAVLLSVHHFQCLGLTPEQQQDLTARDLDRTLANNTHHNVRLPMLDDQC
YHQTWARYCVKYLDAYAEHKLQFWAVTA!NEPSAGLLSGYPFQCLGFTPEHQ!DFIARDLGLTLANSTHHNVRLLMLDDQH
YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGATLANSTHHNVRLLMLDDQR

LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHS
LLLLHWAKVVLTDPEAAICLHGIVVRCHLHFLDAAKAIQRKTHCLSPNTMPFASETRVGSKFGK!SLGLDF!DQGIQCNHN
LLLPHWAKVVLTDPEAAK!VHGIAVHRYLDFLAPAKATPWETHRLFPNTMLFASEAGVGSKFWEQSVWLGSWD!GMQYTHT
LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEAYVGSKFWEQSVRLGSWDRGMQYRHG

IITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAV
IIMSVLYHLVSGTN!KRAPNL!ERLILLPTSINSLTIVDITKGTIHQ!RVVCHLDHFSEFIPEGSQSVGLVASQKNDPDPV
IITKLLYHVVG!THWNLALNPEGGPNRVCNFLYSPFIVDITKVTFYKRPMFYHLGHFSKFIPEGSQGVGLVASQKNDRDAV
IITNLLYHVVGWTAWNLALNPEGGPNWVRNFFDSPIIVDITKHTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAV

ALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
ALMRPDGSPVVVMPSCSSKDVPLTIKYPAVSFPETISPGYPTHIYLWRHR
ALMHPDGSAVVVVLKHSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRCQ
ALMHPDGSAVVVVLNPSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ

The first row shows the original sequence, the second, third and fourth line show the mutated residues. Positions for possible missense/nonsense mutations are marked with red.

dbSNP

In dbSNP we looked for synonymous mutations as well as for missense mutations. The first ones have no influence on the resulting amino acid, so it is also after the mutation the same residue.

Synonymous Mutations

In the following table the synonymous mutations are listed:

ID mutated allele amino acid codon position amino acid position
rs78297361 T R 3 535
rs77130994 A G 3 517
rs1135675 C V 3 499
rs12747811 A Q 3 471
rs79226895 A K 3 464
rs78346899 T Y 3 451
rs75034092 A G 3 416
rs74498117 G L 3 410
rs1141826 A T 3 408
rs75391747 A E 3 388
rs80317710 A E 3 365
rs79311125 T Y 3 352
rs1064647 T G 3 346
rs1064646 G K 3 342
rs74486098 A K 3 237
rs76158190 C S 3 235
rs75370695 A A 3 229
rs76682322 T L 3 224
rs76727497 A P 3 221
rs76717906 T P 3 217
rs78659905 T L 3 213
rs77916306 A P 3 198
rs77191198 A T 3 173
rs74572011 T R 3 170
rs79767521 T P 3 161
rs75249684 C R 3 159
rs79175920 A A 3 129
rs1141821 C T 3 100
rs1141816 A G 3 93
rs78669556 C R 3 87
rs1141810 C S 3 81
rs76337315 A E 3 80
rs1141807 C Y 3 79

Sequence

>sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3

MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYES
TRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPM
ASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDI
YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHS
IITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAV
ALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ

Positions for possible synonymous mutations are marked with blue.

Missense Mutations

In the following table the missense mutations are listed:

ID mutated allele amino acid codon position amino acid position
rs75822236 A H 2 535
rs78016673 T I 2 530
rs77409925 G E 3 513
rs113825752 C P 2 509
rs76071730 G R 2 490
rs74752878 G C 2 457
rs79185870 G L 3 456
rs80020805 A I 3 455
rs77035024 A L 3 450
rs78802049 G E 3 448
rs75564605 C T 2 441
rs75090908 G E 3 438
rs75243000 C S 2 436
rs75385858 C T 2 435
rs77738682 T I 2 431
rs76910485 T L 2 430
rs78715199 A E 3 419
rs77284004 C A 2 419
rs76014919 T C 3 417
rs2230289 T M 2 408
rs75528494 A R 3 405
rs76228122 G C 2 402
rs74979486 A Q 2 398
rs11558184 A Q 2 392
rs1064648 A H 2 368
rs78188205 A D 2 357
rs77321207 G C 2 343
rs77714449 T I 2 342
rs79696831 A H 2 324
rs74731340 A N 2 310
rs79215220 G R 2 305
rs80116658 A D 2 304
rs76725886 G R 2 270
rs79945741 A L 3 252
rs76026102 G C 2 244
rs77451368 A E 2 241
rs74462743 A E 2 234
rs75636769 A E 2 229
rs78911246 T V 2 228
rs80205046 T L 2 221
rs76500263 C P 2 201
rs80222298 T L 2 198
rs78446355 C N 3 196
rs79660787 A E 2 175
rs78657146 T I 2 173
rs75690705 T L 2 170
rs79796061 T V 2 166
rs77959976 A I 3 162
rs79637617 T L 2 161
rs77834747 G S 2 158
rs77019233 A K 3 156
rs1141820 G R 2 99
rs1141818 T Y 1 99
rs78769774 A Q 2 87
rs1141812 A S 1 83
rs1141808 A K 1 80
rs75954905 G L 3 76
rs74953658 A E 3 63

Sequence

>sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3

MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYES
MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNATYCESFDPPTFPALGTLSRYKS

TRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPM
TSSGRQMELSMGPIQANYTGTGLLLTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYKISRVLI

ASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDI
ASCVFSILTYIYEDTPDDFQLHNFSLPEEDTKLNILLIPRALQLAQRPVSLLASPWTSLTWLKTNVEVNGKESLKGQPEDI

YHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQR
CHQTWARYLVKFLDAYAEHKLQFWAVRAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLDRTLANNTHHNVRLLMLDDQH

LLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHS
LLLPHWAKVVLTDPEAAICVHGIAVHWYLDFLDPAKATLGETHHLFPNTMLFASEACVGSKFWEQSVQLGSWDQGMQCSHR

IITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAV
IIMNLLYHVVGCTAWNLALNPEGGLIWVRTSVESPTIVDITKETLYKQPILCHLGHFSKFIPEGSQRVGLVASQKNDLDAV

ALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
ALMRPDGSAVVVVLNRSSKDVPPTIKEPAVGFLETISPGYSIHIYLWRHQ

Mutation map