Difference between revisions of "Mapping SNPs HEXA"
From Bioinformatikpedia
(→Comparison of mutations in HGMD and SNP-DB) |
(→Comparison of mutations in HGMD and SNP-DB) |
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| Line 13: | Line 13: | ||
|26 |
|26 |
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|3 |
|3 |
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| − | |Trp -> |
+ | |Trp -> TER |
|TGGc -> TGA |
|TGGc -> TGA |
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|- |
|- |
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| Line 32: | Line 32: | ||
|137 |
|137 |
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|1 |
|1 |
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| − | |Arg -> |
+ | |Arg -> TER |
|cCGA -> TGA |
|cCGA -> TGA |
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|- |
|- |
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| Line 59: | Line 59: | ||
|rowspan="2" | 180 |
|rowspan="2" | 180 |
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|3 |
|3 |
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| − | |Tyr -> |
+ | |Tyr -> TER |
|TACc -> TAG |
|TACc -> TAG |
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|- |
|- |
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| Line 130: | Line 130: | ||
|329 |
|329 |
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|2 |
|2 |
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| − | |Trp -> |
+ | |Trp -> TER |
|TGG -> TAG |
|TGG -> TAG |
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|- |
|- |
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|393 |
|393 |
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|1 |
|1 |
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| − | |Arg -> |
+ | |Arg -> TER |
|gCGA -> TGA |
|gCGA -> TGA |
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|- |
|- |
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| Line 197: | Line 197: | ||
Graphical representation: |
Graphical representation: |
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| + | |||
| − | MTSSRLWFSLLLAAAFAGRATALWP<font color=red>W</font>PQNFQTSDQRYV<font color=red>L</font>YPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGKRHTLEKNVLVVSVVTPGCNQLPTLESVENYTLTINDDQCL<font color=red>L</font>LSETVWGAL<font color=red>R</font>GLETFSQLVWKSAEGTFFINKTEIEDFPRFPH<font color=red>R</font>GLLLDTS<font color=red>R</font>H<font color=red>Y</font>LPLSSILDTLDVMAYN<font color=red>K</font>LN<font color=red>V</font>FHW<font color=red>H</font>LVDDP<font color=red>S</font><font color=red>F</font>PYESFTFPELMRKGSYNPVTHIYTAQDVKEVIEYA<font color=red>R</font>LR<font color=red>G</font>IRVLAEF<font color=red>D</font>TPGHTLSWGP<font color=red>G</font>IPGLLTPCYSGSEPSGTFGPVNPSLNNTYEF<font color=red>M</font>STFFLEVSSVFPDFYLHLGGDEVDFTC<font color=red>W</font>KSNPEIQDFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVW<font color=red>R</font>EDIPVNYMKELELVTKAGFRALLSAP<font color=red>W</font>YLNRISYGPDWKDFYIVEPLAFEGTPEQKA<font color=red>L</font>VI<font color=red>G</font>GEACMWGEYVDNTNLVPRL<font color=red>W</font>PRAGAVA<font color=red>E</font>RL<font color=red>W</font>SNKLTSDLTFAYE<font color=red>R</font>LSHF<font color=red>R</font>CELLRRGVQAQPLNVGFCEQEFEQT |
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| + | |||
Mutations annotated only in HGMD: |
Mutations annotated only in HGMD: |
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| Line 280: | Line 281: | ||
|rowspan="3" | 203 |
|rowspan="3" | 203 |
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|1 |
|1 |
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| − | | |
+ | |TER -> Arg |
|TGA -> CGA |
|TGA -> CGA |
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|- |
|- |
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| Line 358: | Line 359: | ||
|rowspan="6" | 324 |
|rowspan="6" | 324 |
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|rowspan="2" | 1 |
|rowspan="2" | 1 |
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| − | | |
+ | |TER -> Arg |
|TGA -> AGA |
|TGA -> AGA |
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|- |
|- |
||
| − | | |
+ | |TER -> Arg |
|TGA -> CGA |
|TGA -> CGA |
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|- |
|- |
||
|rowspan="2" | 2 |
|rowspan="2" | 2 |
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| − | |Leu -> |
+ | |Leu -> TER |
|TTG -> TAG |
|TTG -> TAG |
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|- |
|- |
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| Line 518: | Line 519: | ||
|- |
|- |
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|3 |
|3 |
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| − | |Trp -> |
+ | |Trp -> TER |
|TGG -> TGA |
|TGG -> TGA |
||
|- |
|- |
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|rowspan="3" | 269 |
|rowspan="3" | 269 |
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|1 |
|1 |
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| − | | |
+ | |TER -> Arg |
|TGA -> CGA |
|TGA -> CGA |
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|- |
|- |
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| Line 566: | Line 567: | ||
|- |
|- |
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|2 |
|2 |
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| − | | |
+ | |TER -> TER |
|TGA -> TAA |
|TGA -> TAA |
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|- |
|- |
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| Line 644: | Line 645: | ||
|- |
|- |
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|2 |
|2 |
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| − | | |
+ | |TER -> TER |
|TGA -> TAA |
|TGA -> TAA |
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|- |
|- |
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| Line 718: | Line 719: | ||
|rowspan="3" | 540 |
|rowspan="3" | 540 |
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|1 |
|1 |
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| − | | |
+ | |TER -> Glu |
|TAG -> CAG |
|TAG -> CAG |
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|- |
|- |
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| Line 787: | Line 788: | ||
|- |
|- |
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|2 |
|2 |
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| − | | |
+ | |TER -> TER |
|TGA -> TAA |
|TGA -> TAA |
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|- |
|- |
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| Line 804: | Line 805: | ||
|- |
|- |
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|3 |
|3 |
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| − | | |
+ | |TER -> TER |
|TAG -> TAA |
|TAG -> TAA |
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|- |
|- |
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| Line 887: | Line 888: | ||
|rowspan="3" | 509 |
|rowspan="3" | 509 |
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|1 |
|1 |
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| − | | |
+ | |TER -> Glu |
|TAG -> CAG |
|TAG -> CAG |
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|- |
|- |
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| Line 904: | Line 905: | ||
|- |
|- |
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|2 |
|2 |
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| − | | |
+ | |TER -> Ser |
|TGA -> TCA |
|TGA -> TCA |
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|- |
|- |
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| Line 947: | Line 948: | ||
|- |
|- |
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|3 |
|3 |
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| − | |Cys -> |
+ | |Cys -> TER |
|TGC -> TGA |
|TGC -> TGA |
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|- |
|- |
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Revision as of 20:19, 14 June 2011
Comparison of mutations in HGMD and SNP-DB
- Mutations annotated in both databases:
mutations which are not silent and cause a phenotype
| Codonposition | Mutationposition | Amino Acids | Codons |
| 26 | 3 | Trp -> TER | TGGc -> TGA |
| 39 | 2 | Leu -> Arg | CTT -> CGT |
| 127 | 1 | Leu -> Phe | aCTC -> TTC |
| 2 | Leu -> Arg | CTC -> CGC | |
| 137 | 1 | Arg -> TER | cCGA -> TGA |
| 170 | 1 | Arg -> Trp | cCGG -> TGG |
| 2 | Arg -> Gln | CGG -> CAG | |
| 178 | 2 | Arg -> His | CGC -> CAC |
| 2 | Arg -> Leu | CGC -> CTC | |
| 1 | Arg -> Cys | tCGC -> TGC | |
| 180 | 3 | Tyr -> TER | TACc -> TAG |
| 1 | Tyr -> His | tTAC -> CAC | |
| 197 | 2 | Lys -> Thr | AAA -> ACA |
| 200 | 1 | Val -> Met | cGTG -> ATG |
| 204 | 2 | His -> Arg | CAT -> CGT |
| 210 | 2 | Ser -> Phe | TCC -> TTC |
| 211 | 2 | Phe -> Ser | TTC -> TCC |
| 247 | 1 | Arg -> Trp | aCGG -> TGG |
| 250 | 1 | Gly -> Ser | gGGT -> AGT |
| 2 | Gly -> Asp | GGT -> GAT | |
| 2 | Gly -> Val | GGT -> GTT | |
| 258 | 1 | Asp -> His | tGAC -> CAC |
| 269 | 1 | Gly -> Ser | aGGT -> AGT |
| 2 | Gly -> Asp | GGT -> GAT | |
| 301 | 2 | Met -> Arg | ATG -> AGG |
| 329 | 2 | Trp -> TER | TGG -> TAG |
| 393 | 1 | Arg -> TER | gCGA -> TGA |
| 420 | 3 | Trp -> Cys | TGGt -> TGC |
| 3 | Trp -> Cys | TGGt -> TGT | |
| 451 | 1 | Leu -> Val | tCTG -> GTG |
| 454 | 2 | Gly -> Asp | GGT -> GAT |
| 1 | Gly -> Ser | tGGT -> AGT | |
| 474 | 3 | Trp -> Cys | TGGc -> TGC |
| 482 | 1 | Glu -> Lys | cGAA -> AAA |
| 485 | 1 | Trp -> Arg | gTGG -> CGG |
| 499 | 1 | Arg -> Cys | aCGT -> TGT |
| 2 | Arg -> His | CGT -> CAT | |
| 504 | 1 | Arg -> Cys | cCGC -> TGC |
| 2 | Arg -> His | CGC -> CAC |
Graphical representation:
Mutations annotated only in HGMD: not found
Mutations annotated only in SNP-DB:
mutations annotated only in SNP-DB and not silent (pos in codon ist annotiert und sicher):
| Codonposition | Mutationposition | Amino Acids | Codons |
| 506 | 3 | Glu -> Asp | GAA -> GAC |
| Glu -> Asp | GAA -> GAT | ||
| 399 | 1 | Asn -> Asp | AAC -> GAC |
| 436 | 1 | Ile -> Val | ATA -> GTA |
| 456 | 2 | Tyr -> Ser | TAT -> TCT |
| 293 | 2 | Ser -> Ile | AGT -> ATT |
mutations annotated only in SNP-DB and silent: (pos in codon ist annotiert und sicher)
| Position | Amino Acids | Codons |
| 506 | Glu -> Glu | GAA -> GAG |
silent mutation (unklar an welcher stelle im codon wird nirgends annotiert):
| Codonposition | Mutationposition | Amino Acids | Codons |
| 248 | 1 | Asp -> Lys | GAA -> AAA |
| 2 | Arg -> Glu | CGA -> CAA | |
| 3 | Pro -> Pro | CCG -> CCA | |
| 203 | 1 | TER -> Arg | TGA -> CGA |
| 2 | Leu -> Pro | CTG -> CCG | |
| 3 | Thr -> Thr | ACT -> ACC | |
| 179 | 1 | Val -> Leu | GTA -> CTA |
| 2 | Ser -> Thr | AGT -> ACT | |
| 3 | Asp -> Asp | GAG -> GAC | |
| 191 | 1 | Asp -> Asn | GAC -> AAC |
| 2 | Arg -> Lys | AGA -> AAA | |
| 3 | Asp -> Asp | GAG -> GAA | |
| 116 | 1 | Phe -> Leu | TTC -> CTC |
| 2 | Leu -> Pro | CTT -> CCT | |
| 3 | Thr -> Thr | ACT -> ACC | |
| 116 | 1 | Ser -> Pro | TCC -> CCC |
| 2 | Phe -> Ser | TTC -> TCC | |
| 3 | Val -> Val | GTT -> GTC | |
| 446 | 1 | Gly -> Arg | GGG -> AGG |
| 2 | Arg -> Glu | CGG -> CAG | |
| 3 | Ser -> Ser | TCG -> TCA | |
| 324 | 1 | TER -> Arg | TGA -> AGA |
| TER -> Arg | TGA -> CGA | ||
| 2 | Leu -> TER | TTG -> TAG | |
| Leu -> Ser | TTG -> TCG | ||
| 3 | Val -> Val | GTT -> GTA | |
| Val -> Val | GTT -> GTC | ||
| 85 | 1 | Leu -> Leu | TTG -> CTG |
| 2 | Phe -> Ser | TTT -> TCT | |
| 3 | Leu -> Leu | CTT -> CTC | |
| 85 | 1 | Val -> Met | GTG -> ATG |
| 2 | Ser -> Asn | AGT -> AAT | |
| 3 | Lys -> Lys | AAG -> AAA | |
| 85 | 1 | Leu -> Leu | TTA -> CTA |
| 2 | Val -> Ala | GTT -> GCT | |
| 3 | Gly -> Gly | GGT -> GGC | |
| 85 | 1 | Tyr -> His | TAC -> CAC |
| 2 | Iso -> Thr | ATA -> ACA | |
| 3 | Tyr -> Tyr | TAT -> TAC | |
| 85 | 1 | Cys -> Arg | TGC -> CGC |
| 2 | Leu -> Pro | CTG -> CCG | |
| 3 | Ser -> Ser | TCT -> TCC | |
| 85 | 1 | Trp -> Arg | TGG -> CGG |
| 2 | Leu -> Ser | TTG -> TCG | |
| 3 | Leu -> Leu | CTT -> CTC | |
| 85 | 1 | Val -> Leu | GTG -> CTG |
| 2 | Cys -> Ser | TGT -> TCT | |
| 3 | Leu -> Leu | CTG -> CTC | |
| 85 | 1 | Cys -> Arg | TGC -> CGC |
| 2 | Met -> Thr | ATG -> ACG | |
| 3 | Tyr -> Tyr | TAT -> TAC | |
| 358 | 1 | Asp -> His | GAT -> CAT |
| 2 | Arg -> Thr | AGA -> ACA | |
| 3 | Glu -> His | CAG -> CAC | |
| 85 | 1 | Ala -> Pro | GCT -> CCT |
| 2 | Arg -> Pro | CGC -> CCC | |
| 3 | Ser -> Ser | TCG -> TCC | |
| 269 | 1 | Val -> Iso | GTT -> ATT |
| 2 | Gly -> Asp | GGT -> GAT | |
| 3 | Trp -> TER | TGG -> TGA | |
| 269 | 1 | TER -> Arg | TGA -> CGA |
| 2 | Leu -> Pro | CTG -> CCG | |
| 3 | Pro -> Pro | CCT -> CCC | |
| 138 | 1 | Asp -> Lys | GAG -> AAG |
| 2 | Arg -> Lys | AGA -> AAA | |
| 3 | Lys -> Lys | AAG -> AAA | |
| 85 | 1 | Phe -> Leu | TTC -> CTC |
| 2 | Phe -> Ser | TTT -> TCT | |
| 3 | Phe -> Phe | TTT -> TTC | |
| 138 | 1 | Asp -> Lys | GAA -> AAA |
| 2 | TER -> TER | TGA -> TAA | |
| 3 | Leu -> Leu | TTG -> TTA | |
| 85 | 1 | Val -> Iso | GTA -> ATA |
| 2 | Cys -> Tyr | TGT -> TAT | |
| 3 | Leu -> Leu | TTG -> TTA | |
| 109 | 1 | Phe -> Leu | TTT -> CTT |
| 2 | Leu -> Pro | CTT -> CCT | |
| 3 | Thr -> Thr | ACT -> ACC | |
| 191 | 1 | Ala -> Thr | GCC -> ACC |
| 2 | Arg -> His | CGC -> CAC | |
| 3 | Ser -> Ser | TCG -> TCA | |
| 138 | 1 | Glu -> Lys | CAA -> AAA |
| 2 | Thr -> Lys | ACA -> AAA | |
| 3 | Asp -> Asp | GAC -> GAA | |
| 85 | 1 | Cys -> Arg | TGT -> CGT |
| 2 | Leu -> Pro | CTG -> CCG | |
| 3 | Pro -> Pro | CCT -> CCC | |
| 85 | 1 | Asp -> Asn | GAT -> AAT |
| 2 | TER -> TER | TGA -> TAA | |
| 3 | Met -> Iso | ATG -> ATA | |
| 116 | 1 | Ser -> Ala | TCT -> GCT |
| 2 | Phe -> Cys | TTC -> TGC | |
| 3 | Iso -> Met | ATT -> ATG | |
| 85 | 1 | Glu -> Lys | CAG -> AAG |
| 2 | Thr -> Lys | ACA -> AAA | |
| 3 | Asp -> Asp | GAC -> GAA | |
| 85 | 1 | Ser -> Pro | TCT -> CCT |
| 2 | Phe -> Ser | TTC -> TCC | |
| 3 | Leu -> Leu | CTT -> CTC | |
| 474 | 1 | Trp -> Arg | TGG -> CGG |
| 2 | Met -> Thr | ATG -> ACG | |
| 3 | Tyr -> Tyr | TAT -> TAC | |
| 85 | 1 | Ala -> Thr | GCT -> ACT |
| 2 | Arg -> His | CGC -> CAC | |
| 3 | Ser -> Ser | TCG -> TCA | |
| 540 | 1 | TER -> Glu | TAG -> CAG |
| 2 | Iso -> Thr | ATA -> ACA | |
| 3 | His -> His | CAT -> CAC | |
| 476 | 1 | Val -> Iso | GTT -> ATT |
| 2 | Ser -> Asn | AGT -> AAT | |
| 3 | Lys -> Lys | AAG -> AAA | |
| 29 | 1 | Phe -> Leu | TTC -> CTC |
| 2 | Val -> Ala | GTT -> GCT | |
| 3 | Cys -> Cys | TGT -> TGC | |
| 85 | 1 | Trp -> Arg | TGG -> CGG |
| 2 | Leu -> Ser | TTG -> TCG | |
| 3 | Phe -> Phe | TTT -> TTC | |
| 85 | 1 | Leu -> Iso | CTA -> ATA |
| 2 | Ser -> Tyr | TCT -> TAT | |
| 3 | Phe -> Leu | TTC -> TTA | |
| 138 | 1 | Asp -> Lys | GAG -> AAG |
| 2 | TER -> TER | TGA -> TAA | |
| 3 | Leu -> Leu | CTG -> CTA | |
| 85 | 1 | Gly -> Arg | GGA -> AGA |
| 2 | Arg -> Lys | AGG -> AAG | |
| 3 | TER -> TER | TAG -> TAA | |
| 85 | 1 | Val -> Leu | GTC -> CTC |
| 2 | Gly -> Ala | GGT -> GCT | |
| 3 | Gly -> Gly | GGG -> GGC | |
| 208 | 1 | Leu -> Leu | TTG -> CTG |
| 2 | Iso -> Thr | ATT -> ACT | |
| 3 | Tyr -> Tyr | TAT -> TAC | |
| 358 | 1 | Trp -> Arg | TGG -> AGG |
| 2 | Leu -> Glu | CTG -> CAG | |
| 3 | Pro -> Pro | CCT -> CCA | |
| 358 | 1 | Trp -> Gly | TGG -> GGG |
| 2 | Val -> Gly | GTG -> GGG | |
| 3 | Ser -> Arg | AGT -> AGG | |
| 444 | 1 | Ser -> Pro | TCA -> CCA |
| 2 | Phe -> Ser | TTC -> TCC | |
| 3 | Leu -> Leu | CTT -> CTC | |
| 474 | 1 | Leu -> Leu | TTG -> CTG |
| 2 | Val -> Ala | GTT -> GCT | |
| 3 | Gly -> Gly | GGT -> GGC | |
| 509 | 1 | TER -> Glu | TAG -> CAG |
| 2 | Iso -> Thr | ATA -> ACA | |
| 3 | Tyr -> Tyr | TAT -> TAC | |
| 85 | 1 | Asp -> Glu | GAG -> CAG |
| 2 | TER -> Ser | TGA -> TCA | |
| 3 | Val -> Val | GTG -> GTC | |
| 85 | 1 | Val -> Leu | GTT -> CTT |
| 2 | Ser -> Thr | AGT -> ACT | |
| 3 | Asp -> Asp | GAG -> GAC | |
| 3 | 1 | Phe -> Leu | TTC -> CTC |
| 2 | Val -> Ala | GTT -> GCT | |
| 3 | Ser -> Ser | AGT -> AGC | |
| 85 | 1 | Glu -> Lys | CAG -> AAG |
| 2 | Ala -> Asp | GCA -> GAA | |
| 3 | Cys -> TER | TGC -> TGA | |
| 85 | 1 | Asp -> Asn | GAC -> AAC |
| 2 | Arg -> Glu | CGA -> CAA | |
| 3 | Pro -> Pro | CCG -> CCA |
