Difference between revisions of "Homology-modelling HEXA/swissmodel 3CUI"
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| + | Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment. |
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TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY |
TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY |
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3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ |
3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ |
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TARGET hhhhhhh h |
TARGET hhhhhhh h |
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3cuiA ss hhhhhhh h |
3cuiA ss hhhhhhh h |
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| + | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology modelling]]. |
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Latest revision as of 13:58, 12 June 2011
Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment.
TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY
3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------
TARGET hhhhhh s ss sssss s sssssss
3cuiA hhhhhhh h sssss s
TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS
3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd
TARGET ssssss s hhhhhh hhh ssss s ssssss sssss
3cuiA hhhhh hhh s s ssss
TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK
3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk
TARGET ss s sssss s ssss ssshhhhh hhhhhhhh
3cuiA hhhhh hhhhhhhh
TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL
3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa
TARGET hhh sssssss sssss ss hhhhhh
3cuiA sss hhhh hhhhhh
TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL
3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ----------
TARGET hhhhhhhhh sss sss sssss sss ssssss sss
3cuiA hhhhhhhhhh
TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY
3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn--
TARGET sss sss sss ss s sss hhhhh
3cuiA h h ssss s ss s sss hhhhh
TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF
3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg
TARGET hhhhhhhhh hhhsss ss sss
3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh
TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV
3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ----------
TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss
3cuiA sssssss ssss hhhhhhhhhh sss
TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ
3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq
TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s
3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s
TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE
3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya
TARGET sssssss s ssss hhhh s ssss
3cuiA ssss hhhh s ssss sss s
TARGET 499 RLSHFRCELL RRGV
3cuiA 301 kkpayaavme afga-
TARGET hhhhhhh h
3cuiA ss hhhhhhh h
Back to [Homology modelling].
