Difference between revisions of "Homology-modelling HEXA/swissmodel 3CUI"
From Bioinformatikpedia
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| + | Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment. |
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| − | TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY |
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| − | 3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ |
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| − | |||
| − | TARGET hhhhhh s ss sssss s sssssss |
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| − | 3cuiA hhhhhhh h sssss s |
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| + | TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY |
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| − | TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS |
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| − | 3cuiA |
+ | 3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------ |
| − | + | ||
| − | TARGET |
+ | TARGET hhhhhh s ss sssss s sssssss |
| − | 3cuiA |
+ | 3cuiA hhhhhhh h sssss s |
| + | |||
| + | |||
| + | TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS |
||
| + | 3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd |
||
| + | |||
| + | TARGET ssssss s hhhhhh hhh ssss s ssssss sssss |
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| + | 3cuiA hhhhh hhh s s ssss |
||
| + | |||
| + | |||
| + | TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK |
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| + | 3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk |
||
| + | |||
| + | TARGET ss s sssss s ssss ssshhhhh hhhhhhhh |
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| + | 3cuiA hhhhh hhhhhhhh |
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| + | |||
| + | |||
| + | TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL |
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| + | 3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa |
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| + | |||
| + | TARGET hhh sssssss sssss ss hhhhhh |
||
| + | 3cuiA sss hhhh hhhhhh |
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| + | |||
| + | |||
| + | TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL |
||
| + | 3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ---------- |
||
| + | |||
| + | TARGET hhhhhhhhh sss sss sssss sss ssssss sss |
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| + | 3cuiA hhhhhhhhhh |
||
| + | |||
| + | |||
| + | TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY |
||
| + | 3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn-- |
||
| + | |||
| + | TARGET sss sss sss ss s sss hhhhh |
||
| + | 3cuiA h h ssss s ss s sss hhhhh |
||
| + | |||
| + | |||
| + | TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF |
||
| + | 3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg |
||
| + | |||
| + | TARGET hhhhhhhhh hhhsss ss sss |
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| + | 3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh |
||
| + | |||
| + | |||
| + | TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV |
||
| + | 3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ---------- |
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| + | |||
| + | TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss |
||
| + | 3cuiA sssssss ssss hhhhhhhhhh sss |
||
| + | |||
| + | |||
| + | TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ |
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| + | 3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq |
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| + | |||
| + | TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s |
||
| + | 3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s |
||
| + | |||
| + | |||
| + | TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE |
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| + | 3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya |
||
| + | |||
| + | TARGET sssssss s ssss hhhh s ssss |
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| + | 3cuiA ssss hhhh s ssss sss s |
||
| + | |||
| + | |||
| + | TARGET 499 RLSHFRCELL RRGV |
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| + | 3cuiA 301 kkpayaavme afga- |
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| + | |||
| + | TARGET hhhhhhh h |
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| + | 3cuiA ss hhhhhhh h |
||
| + | Back to [[http://i12r-studfilesrv.informatik.tu-muenchen.de/wiki/index.php/Homology-modelling_HEXA Homology modelling]]. |
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| − | TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK |
||
| − | 3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk |
||
| − | |||
| − | TARGET ss s sssss s ssss ssshhhhh hhhhhhhh |
||
| − | 3cuiA hhhhh hhhhhhhh |
||
| − | |||
| − | |||
| − | TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL |
||
| − | 3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa |
||
| − | |||
| − | TARGET hhh sssssss sssss ss hhhhhh |
||
| − | 3cuiA sss hhhh hhhhhh |
||
| − | |||
| − | |||
| − | TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL |
||
| − | 3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ---------- |
||
| − | |||
| − | TARGET hhhhhhhhh sss sss sssss sss ssssss sss |
||
| − | 3cuiA hhhhhhhhhh |
||
| − | |||
| − | |||
| − | TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY |
||
| − | 3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn-- |
||
| − | |||
| − | TARGET sss sss sss ss s sss hhhhh |
||
| − | 3cuiA h h ssss s ss s sss hhhhh |
||
| − | |||
| − | |||
| − | TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF |
||
| − | 3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg |
||
| − | |||
| − | TARGET hhhhhhhhh hhhsss ss sss |
||
| − | 3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh |
||
| − | |||
| − | |||
| − | TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV |
||
| − | 3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ---------- |
||
| − | |||
| − | TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss |
||
| − | 3cuiA sssssss ssss hhhhhhhhhh sss |
||
| − | |||
| − | |||
| − | TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ |
||
| − | 3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq |
||
| − | |||
| − | TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s |
||
| − | 3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s |
||
| − | |||
| − | |||
| − | TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE |
||
| − | 3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya |
||
| − | |||
| − | TARGET sssssss s ssss hhhh s ssss |
||
| − | 3cuiA ssss hhhh s ssss sss s |
||
| − | |||
| − | |||
| − | TARGET 499 RLSHFRCELL RRGV |
||
| − | 3cuiA 301 kkpayaavme afga- |
||
| − | |||
| − | TARGET hhhhhhh h |
||
| − | 3cuiA ss hhhhhhh h |
||
Latest revision as of 13:58, 12 June 2011
Prediction of Swissmodel. Target is HEXA_HUMAN, the template is 3CUI, chain A. Here you can see the secondary structure prediction based on the alignment.
TARGET 9 SLLLAAAFAG RATALWPWPQ NFQTSDQRYV LYPNNFQFQY
3cuiA 1 attlkeaadg ---------- --agrdfgfa ldpn------
TARGET hhhhhh s ss sssss s sssssss
3cuiA hhhhhhh h sssss s
TARGET 49 DVSSAAQPGC SVLDEAFQRY RDLLFGSGSW PRPYLTGKRH TLEKNVLVVS
3cuiA 23 ---------- rlseaqykai adsefn---- ---------l vvaenamkwd
TARGET ssssss s hhhhhh hhh ssss s ssssss sssss
3cuiA hhhhh hhh s s ssss
TARGET 99 VVTPGCNQLP TLESVENYTL TINDDQCLLL SETVWGALRG LETFSQLVWK
3cuiA 50 atepsqnsfs ---------- ---------- ----fgagdr vasyaadtgk
TARGET ss s sssss s ssss ssshhhhh hhhhhhhh
3cuiA hhhhh hhhhhhhh
TARGET 149 SAEGTFFINK TEIEDFPRFP HRGLLLDTSR HYLPLSSILD TLDVMAYNKL
3cuiA 76 elyghtlvwh sqlpdwakn- ---------- ---------- -lngsafesa
TARGET hhh sssssss sssss ss hhhhhh
3cuiA sss hhhh hhhhhh
TARGET 199 NVFHWHLVDD PSFPYESFTF PELMRKGSYN PVTHIYTAQD VKEVIEYARL
3cuiA 104 mvnhvtkvad ---------- ---------- ---------- ----------
TARGET hhhhhhhhh sss sss sssss sss ssssss sss
3cuiA hhhhhhhhhh
TARGET 249 RGIRVLAEFD TPGHTLSWGP GIPGLLTPCY SGSEPSGTFG PVNPSLNNTY
3cuiA 114 ---------h fegkvaswd- ----vvneaf adgggrrqds afqqklgn--
TARGET sss sss sss ss s sss hhhhh
3cuiA h h ssss s ss s sss hhhhh
TARGET 299 EFMSTFFLEV SSVFPDFYLH LGGDEVDFTC WKSNPEIQDF MRKKGFGEDF
3cuiA 148 gyietafraa raadptaklc indynvegin aksns-lydl vkd--fkarg
TARGET hhhhhhhhh hhhsss ss sss
3cuiA hhhhhhhhhh hhh sss sss hhhhh hhhh hhh hhhh
TARGET 349 KQLESFYIQT LLDIVSSYGK GYVVWQEVFD NKVKIQPDTI IQVWREDIPV
3cuiA 195 vpldcvgfqs hlivgqvpgd frqnlqrfad lgvdvr---- ----------
TARGET sssssss ssss sss hhhhhhhhhh sss sss ssss ssss
3cuiA sssssss ssss hhhhhhhhhh sss
TARGET 399 NYMKELELVT KAGFRALLSA PWYLNRISYG PDWKDFYIVE PLAFEGTPEQ
3cuiA 231 --iteldirm rtps------ ----datkla tqaadykkvv qacmqvtrcq
TARGET ssss ssss sssssss s ssss hhhhh hhhhhhhhhh hhhsss s
3cuiA ss ssss ss hhhhh hhhhhhhhhh hhhh s
TARGET 449 KALVIGGEAC MWGEYVDNTN LVPRLWPRAG AVAERLWSNK LTSDLTFAYE
3cuiA 269 gvtvwg---- ----itdkys wvpdvfp--g egaalvwd-- ------asya
TARGET sssssss s ssss hhhh s ssss
3cuiA ssss hhhh s ssss sss s
TARGET 499 RLSHFRCELL RRGV
3cuiA 301 kkpayaavme afga-
TARGET hhhhhhh h
3cuiA ss hhhhhhh h
Back to [Homology modelling].
