Difference between revisions of "ASPA Sequence Based Predictions"
From Bioinformatikpedia
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===DISOPRED=== |
===DISOPRED=== |
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| − | [[File:Aa9f21ee-f0a3-4cd4-9cf0-366fe1b5377e.dis 1.diso.png]] |
+ | [[File:Aa9f21ee-f0a3-4cd4-9cf0-366fe1b5377e.dis 1.diso.png|400px|thumb|right|DISOPRED result graph for Aspartoacyclase]] |
<pre>DISOPRED predictions for a false positive rate threshold of: 2% |
<pre>DISOPRED predictions for a false positive rate threshold of: 2% |
||
Revision as of 21:07, 5 June 2011
Contents
Prediction of Secondary Structure Elements
PsiPred
# PSIPRED HFORMAT (PSIPRED V3.0)
Conf: 987522213466199993246776008999999984450000587389976339987971
Pred: CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH
AA: MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
10 20 30 40 50 60
Conf: 998788998878786647999999984999999999988199999997428994187898
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
AA: CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
70 80 90 100 110 120
Conf: 999505864599448999999998762999737862048886301220027861499667
Pred: CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEEEC
AA: NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
130 140 150 160 170 180
Conf: 877898808999999999999998976406998899973479998113515579877700
Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
AA: PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
190 200 210 220 230 240
Conf: 552467669998546888832213699778518622057770372000011102000100
Pred: EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHCCCCHHHEECCE
AA: AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
250 260 270 280 290 300
Conf: 3544256113309
Pred: EEEEECCCEEECC
AA: LTLNAKSIRCCLH
310
JPred3
MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYID ------------EEEEEEEE------HHHHHHHHHH---------EEEEEEEE-HHHHHH-----H CDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLILEDSR ---------------------HHHHHHHHHHHHHH-------EEEEEE-----------EEEE--- NNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLRADILDQMRKM -HHHHHHHHHHHH------EEEEEE---------HHEE----EEEEE---------HHHHHHHHHH IKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQDQDWKPLHPGDPMFLT HHHHHHHHHHH----------EEEEEEEEEE----------EEEE----------------HHE-- LDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSIRCCLH ----EEEE----EEEEEEE-----HHH-HHHHHHHHEEE-----EEEE-
DSSP
10 20 30 40 50 60
| | | | | |
1 - 60 EHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCD
1 - 60 SSSSSS TTTT HHHHHHHHHHTT 333 TT SSSSSST HHHHHTTTT TTT
1 - 60
1 - 60 AA AA A AA AAA AA AAAA A A AA AAAA AAAA
70 80 90 100 110 120
| | | | | |
61 - 120 LNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLIL
61 - 120 333 THHHHTT TTT HHHHHHHHHHHHH TTTTTT TSSSSSSS TTT SSSSSS
61 - 120 ** * * ** ** * *
61 - 120 A AAA AAAAAAAAA A A AA AAA AA A
130 140 150 160 170 180
| | | | | |
121 - 180 EDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLR
121 - 180 T TT HHHHHHHHHHHHHHTTT SSSSS TT 3333TTSSSSSSSST TT
121 - 180 * ** **
121 - 180 A A A AA AAA AAAA A AAAAAA AA A A A
190 200 210 220 230 240
| | | | | |
181 - 240 ADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQ
181 - 240 HHHHHHHHHHHHHHHHHHHHHHTT SSSSSSSSSSSS TTT TSS TTTT
181 - 240
181 - 240 A AA AA AA AA AAAA AA A A A AAA A AAAAA A AA
250 260 270 280 290 300
| | | | | |
241 - 300 DQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSI
241 - 300 T TTT TTTSSSS TT SSS TTT SSSTTT 333TTTT TSSSSSSSSSSS
241 - 300
241 - 300 AA AA AAAAA A AAAAAA AAAAA A AAA A AAA A A
301 - 302 RC
301 - 302
301 - 302
301 - 302 AA
310 320 330 340 350 360
| | | | | |
303 - 362 EHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCD
303 - 362 SSSSSS TTTT HHHHHHHHHHHH 3333 TT SSSSSST HHHHHTT T TTT
303 - 362
303 - 362 AA AA AA AAA AA AAAA A A A AA AAAA AAAA
370 380 390 400 410 420
| | | | | |
363 - 422 LNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTSNMGCTLIL
363 - 422 333 THHHHTT TTT HHHHHHHHHHHHH TTTTTT TSSSSSSS TTT SSSSSS
363 - 422 ** *** * ** ****
363 - 422 A AAA AAAAAAAAA A A AA AAA AA A
430 440 450 460 470 480
| | | | | |
423 - 482 EDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVGPQPQGVLR
423 - 482 T TT HHHHHHHHHHHHHHTTT SSSSS TTTT 3333TTSSSSSSSS TT
423 - 482
423 - 482 A A A AA AA AAAA A AAAAAA AA A A
490 500 510 520 530 540
| | | | | |
483 - 542 ADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIAAIIHPNLQ
483 - 542 HHHHHHHHHHHHHHHHHHHHHHTT SSSSSSSSSSSS TTT TSS TTTT
483 - 542 *** *
483 - 542 A AA AA A AA A AA AA A A A AAA A AAAAA A A AA
550 560 570 580 590 600
| | | | | |
543 - 602 DQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTKLTLNAKSI
543 - 602 T TTT TTTSSSS TT SSS TTT SSSTTT THHHHTT TSSSSSSSSSSS
543 - 602 *
543 - 602 AA AA AAAAA A AAAAAA AAAAA A AAA A AAAA A AA
603 - 604 RC
603 - 604
603 - 604
603 - 604 AA
Clearly solvent accessible: A; involved in symmetry contacts: *
pdb id: 2o53
Prediction of disordered regions
DISOPRED
DISOPRED predictions for a false positive rate threshold of: 2%
conf: 999999999877640000000000000000000000000000000000000000000000
pred: **********..................................................
AA: MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
10 20 30 40 50 60
conf: 000000000000000356777788777654200000000000000000000000000000
pred: ......................**....................................
AA: CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
70 80 90 100 110 120
conf: 000000000000000000000000000000000000000000000000000000000000
pred: ............................................................
AA: NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
130 140 150 160 170 180
conf: 000000000000000000000000000000000000000000000000000000000000
pred: ............................................................
AA: PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
190 200 210 220 230 240
conf: 000000000000000000000000000000000000000000000000000000000000
pred: ............................................................
AA: AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
250 260 270 280 290 300
conf: 0000000000002
pred: .............
AA: LTLNAKSIRCCLH
310
Asterisks (*) represent disorder predictions and dots (.)
prediction of order. The confidence estimates give a rough
indication of the probability that each residue is disordered.
POODLE
POS 1 M T S C H I A E E H I
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.461 0.444 0.413 0.401 0.418 0.461 0.537 0.644 0.693 0.62 0.468
POS 12 Q K V A I F G G T H G
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.321 0.238 0.177 0.146 0.128 0.116 0.106 0.104 0.111 0.126 0.132
POS 23 N E L T G V F L V K H
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.131 0.118 0.098 0.073 0.053 0.041 0.036 0.035 0.035 0.036 0.036
POS 34 W L E N G A E I Q R T
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.038 0.045 0.06 0.081 0.099 0.119 0.133 0.146 0.147 0.143 0.129
POS 45 G L E V K P F I T N P
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.111 0.09 0.073 0.062 0.054 0.047 0.039 0.033 0.033 0.037 0.041
POS 56 R A V K K C T R Y I D
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.043 0.047 0.054 0.062 0.068 0.071 0.073 0.07 0.067 0.069 0.075
POS 67 C D L N R I F D L E N
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.08 0.081 0.078 0.075 0.073 0.072 0.076 0.094 0.127 0.176 0.249
POS 78 L G K K M S E D L P Y
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.403 0.554 0.737 0.766 0.804 0.755 0.682 0.65 0.632 0.636 0.583
POS 89 E V R R A Q E I N H L
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.505 0.448 0.348 0.262 0.201 0.16 0.131 0.11 0.103 0.104 0.111
POS 100 F G P K D S E D S Y
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.116 0.117 0.108 0.089 0.067 0.049 0.039 0.034 0.033 0.035
POS 110 D I I F D L H N T T
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.038 0.041 0.043 0.043 0.042 0.041 0.042 0.045 0.052 0.06
POS 120 S N M G C T L I L E
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.07 0.081 0.092 0.101 0.109 0.111 0.107 0.096 0.085 0.072
POS 130 D S R N N F L I Q M
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.06 0.051 0.046 0.04 0.036 0.033 0.032 0.031 0.031 0.031
POS 140 F H Y I K T S L A P
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.033 0.036 0.04 0.043 0.046 0.049 0.05 0.053 0.055 0.059
POS 150 L P C Y V Y L I E H
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.065 0.073 0.088 0.103 0.115 0.119 0.118 0.111 0.104 0.104
POS 160 P S L K Y A T T R S
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.121 0.147 0.19 0.229 0.264 0.263 0.245 0.196 0.149 0.098
POS 170 I A K Y P V G I E V
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.069 0.053 0.051 0.057 0.066 0.08 0.093 0.102 0.103 0.099
POS 180 G P Q P Q G V L R A
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.096 0.094 0.095 0.095 0.099 0.098 0.099 0.095 0.094 0.086
POS 190 D I L D Q M R K M I
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.074 0.059 0.048 0.04 0.038 0.038 0.038 0.039 0.04 0.043
POS 200 K H A L D F I H H F
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.046 0.049 0.051 0.052 0.056 0.064 0.077 0.092 0.112 0.142
POS 210 N E G K E F P P C A
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.17 0.198 0.21 0.311 0.281 0.248 0.105 0.084 0.072 0.071
POS 220 I E V Y K I I E K V
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.069 0.065 0.06 0.056 0.052 0.054 0.062 0.076 0.105 0.141
POS 230 D Y P R D E N G E I
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.176 0.203 0.224 0.227 0.217 0.209 0.228 0.248 0.271 0.282
POS 240 A A I I H P N L Q D
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.289 0.269 0.24 0.208 0.188 0.169 0.155 0.152 0.167 0.193
POS 250 Q D W K P L H P G D
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.222 0.236 0.235 0.21 0.175 0.136 0.11 0.097 0.099 0.104
POS 260 P M F L T L D G K T
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.107 0.108 0.104 0.095 0.084 0.077 0.073 0.082 0.102 0.125
POS 270 I P L G G D C T V Y
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.144 0.162 0.169 0.166 0.156 0.149 0.133 0.117 0.099 0.089
POS 280 P V F V N E A A Y Y
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.077 0.072 0.067 0.064 0.066 0.082 0.122 0.184 0.241 0.279
POS 290 E K K E A F A K T T
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.282 0.264 0.236 0.229 0.238 0.257 0.263 0.252 0.231 0.222
POS 300 K L T L N A K S I R
-1 -1 -1 -1 -1 -1 -1 -1 -1 -1
0.246 0.278 0.305 0.31 0.303 0.277 0.263 0.371 0.382 0.38
IUPRED
...
Meta-Disorder
...
Prediction of transmembrane alpha-helices and signal peptides
TMHMM
...
Phobius & PolyPhobius
...
OCTOPUS & SPOCTOPUS
...
SignalP
...
TargetP
...
Prediction of GO terms
GOPET
...
Pfam
...
ProtFun 2.2
...
