Difference between revisions of "Normal mode analysis (Phenylketonuria)"
From Bioinformatikpedia
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=== elNémo === |
=== elNémo === |
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| − | elNémo provides following outcomes: |
+ | elNémo provides following outcomes: <br> |
| + | *PDB-files with the conformations of the modes |
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| + | *animations of the modes |
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| + | *CA-vari (calculates distance fluctuations between all C-alpha atoms) |
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| + | *R<sup>2</sup> (visualization of the mean square displacement of all C-alpha atoms associated with a given mode) |
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| + | *B-factor analysis: Correlation= 0.534 for 307 C-alpha atoms |
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| + | *RMSD: only if two structures are used |
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==== Mode 7 ==== |
==== Mode 7 ==== |
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Revision as of 11:05, 28 July 2013
Page still under construction!!!
Contents
Summary
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Normal Mode Analysis
Lab journal
For the analysis, we used the pdb structure 1J8U from the task before (Task 9 - Structure-based mutation analysis).
WEBnm@
Mode 7
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Mode 8
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Mode 9
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Mode 10
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Mode 11
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Mode 12
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elNémo
elNémo provides following outcomes:
- PDB-files with the conformations of the modes
- animations of the modes
- CA-vari (calculates distance fluctuations between all C-alpha atoms)
- R2 (visualization of the mean square displacement of all C-alpha atoms associated with a given mode)
- B-factor analysis: Correlation= 0.534 for 307 C-alpha atoms
- RMSD: only if two structures are used
Mode 7
...
Mode 8
...
Mode 9
...
Mode 10
...
Mode 11
...
VMD
...
References
<references/>
