Difference between revisions of "ASPA Sequence Based Predictions"
From Bioinformatikpedia
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===PsiPred=== |
===PsiPred=== |
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| + | [[File:3ef7a0ac-0a08-412e-bf9f-e54bac6babd0.psi 1.png|350px|thumb|right|PsiPred results for Aspartoacyclase]] |
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| + | <pre># PSIPRED HFORMAT (PSIPRED V3.0) |
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| + | Conf: 987522213466199993246776008999999984450000587389976339987971 |
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| + | Pred: CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH |
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| + | AA: MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK |
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| + | 10 20 30 40 50 60 |
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| + | Conf: 998788998878786647999999984999999999988199999997428994187898 |
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| + | Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC |
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| + | AA: CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS |
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| + | 70 80 90 100 110 120 |
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| + | Conf: 999505864599448999999998762999737862048886301220027861499667 |
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| + | Pred: CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEEEC |
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| + | AA: NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG |
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| + | 130 140 150 160 170 180 |
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| + | Conf: 877898808999999999999998976406998899973479998113515579877700 |
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| + | Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE |
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| + | AA: PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA |
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| + | 190 200 210 220 230 240 |
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| + | Conf: 552467669998546888832213699778518622057770372000011102000100 |
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| + | Pred: EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHCCCCHHHEECCE |
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| + | AA: AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK |
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| + | 250 260 270 280 290 300 |
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| + | Conf: 3544256113309 |
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| + | Pred: EEEEECCCEEECC |
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| + | AA: LTLNAKSIRCCLH |
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| + | 310 |
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| + | </pre> |
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===JPred3=== |
===JPred3=== |
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Revision as of 19:19, 4 June 2011
Contents
Prediction of Secondary Structure Elements
PsiPred
# PSIPRED HFORMAT (PSIPRED V3.0)
Conf: 987522213466199993246776008999999984450000587389976339987971
Pred: CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHH
AA: MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
10 20 30 40 50 60
Conf: 998788998878786647999999984999999999988199999997428994187898
Pred: CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCC
AA: CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
70 80 90 100 110 120
Conf: 999505864599448999999998762999737862048886301220027861499667
Pred: CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCEEEEEC
AA: NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
130 140 150 160 170 180
Conf: 877898808999999999999998976406998899973479998113515579877700
Pred: CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
AA: PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
190 200 210 220 230 240
Conf: 552467669998546888832213699778518622057770372000011102000100
Pred: EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHCCCCHHHEECCE
AA: AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
250 260 270 280 290 300
Conf: 3544256113309
Pred: EEEEECCCEEECC
AA: LTLNAKSIRCCLH
310
JPred3
...
DSSP
...
Prediction of disordered regions
DISOPRED
...
POODLE
...
IUPRED
...
Meta-Disorder
...
Prediction of transmembrane alpha-helices and signal peptides
TMHMM
...
Phobius & PolyPhobius
...
OCTOPUS & SPOCTOPUS
...
SignalP
...
TargetP
...
Prediction of GO terms
GOPET
...
Pfam
...
ProtFun 2.2
...
