Difference between revisions of "Task 7: Research SNPs"
From Bioinformatikpedia
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[[Lab journal Task 7]] |
[[Lab journal Task 7]] |
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| + | table.colBasic2 { |
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| + | border: 1px solid black; |
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| + | border-collapse:collapse; |
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| + | width: 40%; |
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| + | } |
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| + | .colBasic2 th,td { |
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| + | padding: 3px; |
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| + | border: 1px solid black; |
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| + | } |
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| + | .colBasic2 td { |
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| + | } |
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| + | /* for orange try #ff7f00 and #ffaa56 |
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| + | for blue try #005fbf and #aad4ff |
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| + | maria's style |
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| + | blue: #adceff |
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| + | grey: #efefef |
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| + | */ |
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| + | .colBasic2 tr th { background-color:#efefef; color: black;} |
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| + | .colBasic2 tr:first-child th { background-color:#adceff; color:black;} |
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| + | [edit] |
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| + | </css> |
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== HGMD == |
== HGMD == |
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*What information is given? |
*What information is given? |
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| + | HGMD |
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| + | |||
*How recent? |
*How recent? |
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*Where does the information come from? |
*Where does the information come from? |
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== dbSNP == |
== dbSNP == |
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| − | + | *What information is given? |
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| − | + | *How recent? |
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| − | + | *Where does the information come from? |
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| + | === Results === |
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| + | synonymous SNPS in coding region of isoform 1 human and trainscript variant 1 |
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| + | {| class="colBasic2" |
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| + | ! cluster ID | MAF | SNP allel | residue | codon position | aa position |
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| + | |- |
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| + | | | 9E-4 | G -> A | 3 | 7 |
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| + | |- |
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| + | |} |
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== SNPdbe == |
== SNPdbe == |
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| − | + | *What information is given? |
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| − | + | *How recent? |
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| − | + | *Where does the information come from? |
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== Mutation map == |
== Mutation map == |
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| − | + | *What information is given? |
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| − | + | *How recent? |
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| − | + | *Where does the information come from? |
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Revision as of 19:19, 23 June 2013
<css> table.colBasic2 { margin-left: auto; margin-right: auto; border: 1px solid black; border-collapse:collapse; width: 40%; }
.colBasic2 th,td { padding: 3px; border: 1px solid black; }
.colBasic2 td { text-align:left; }
/* for orange try #ff7f00 and #ffaa56 for blue try #005fbf and #aad4ff
maria's style blue: #adceff grey: #efefef
- /
.colBasic2 tr th { background-color:#efefef; color: black;} .colBasic2 tr:first-child th { background-color:#adceff; color:black;}
[edit] </css>
Contents
HGMD
- What information is given?
HGMD
- How recent?
- Where does the information come from?
dbSNP
- What information is given?
- How recent?
- Where does the information come from?
Results
synonymous SNPS in coding region of isoform 1 human and trainscript variant 1
| MAF | SNP allel | residue | codon position | aa position |
|---|
| 9E-4 | G -> A | 3 | 7 |
SNPdbe
- What information is given?
- How recent?
- Where does the information come from?
Mutation map
- What information is given?
- How recent?
- Where does the information come from?
