Difference between revisions of "CompareCath.py"

From Bioinformatikpedia
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usage: compareCath.py [-h] -i IFILE -q QUERY
 
usage: compareCath.py [-h] -i IFILE -q QUERY
  +
optional arguments:
 
optional arguments:
 
 
-h, --help show this help message and exit
 
-h, --help show this help message and exit
 
-i IFILE with parse_output.pl created results file (default: None)
 
-i IFILE with parse_output.pl created results file (default: None)

Revision as of 19:15, 5 May 2013

The script compareCath.py can be found on the biocluster at /home/alexander/studium/master-prac/scripts.

usage: compareCath.py [-h] -i IFILE -q QUERY
optional arguments:
 -h, --help  show this help message and exit
 -i IFILE    with parse_output.pl created results file (default: None)
 -q QUERY    PDB id and chain of query, e.g. 1a6zA (default: None)

In CATH each domain of the protein is assigned to a fold class. This means, that one query protein can have several fold classes, one for each domain. This pyhton script computes the number of fold classes that each hit has in common with the specified query and the output is a histogram.