Difference between revisions of "Normal mode analysis Gaucher Disease"
From Bioinformatikpedia
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| − | <caption>The deformation energy for modes 7 to 20 from Webnma@.</caption> |
+ | <caption>The deformation energy for modes 7 to 20 for protein structure 2NT0 chain A from Webnma@.</caption> |
</figtable> |
</figtable> |
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| + | <figure id="fig:Eingenvalues_plot"> |
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| + | [[File:Eingenvalues_plot_2NT0.png|thumb|400px|left|<caption> The Eigenvalues Plot for for protein structure 2NT0 chain A from Webnma@.</caption>]] |
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| + | </figure> |
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=== Atomic Displacement === |
=== Atomic Displacement === |
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Revision as of 02:34, 7 July 2012
Contents
Introduction
Technical details are reported in our protocol
WEBnm@
Deformation Energies
"Deformation energies and eigenvalues reflect the energy associated with each mode and are inversely related to the amplitude of the motion described by a the corresponding modes. The protein structure moves along all the normal modes at once. A mode should only be interpreted in isolation if it is energetically well separated from other modes. " - from Webnma@
Below are the values of the deformation energy for modes 7 to 20.
<figtable id="tab:defor_enery">
| Mode Index | Deformation Energy | Mode Index | Deformation Energy | ||
|---|---|---|---|---|---|
| 7 | 1663.91 | 14 | 6698.31 | ||
| 8 | 2377.48 | 15 | 9791.69 | ||
| 9 | 2720.71 | 16 | 9534.10 | ||
| 10 | 5191.86 | 17 | 10022.74 | ||
| 11 | 5033.67 | 18 | 11137.44 | ||
| 12 | 6174.70 | 19 | 11592.80 | ||
| 13 | 6360.72 | 20 | 12045.03 | ||
The deformation energy for modes 7 to 20 for protein structure 2NT0 chain A from Webnma@. </figtable>
<figure id="fig:Eingenvalues_plot">
</figure>
