Difference between revisions of "Fabry:Structure-based mutation analysis/FoldXtables"

From Bioinformatikpedia
(Created page with "== RawFoldX == <div style="float:left; border:thin solid lightgrey; margin: 0px 0px 0px 0px;"> <figtable id="tab:RawFoldX"> <caption>Shown are the stability of each SNP and their…")
 
(→‎RawFoldX)
 
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|-
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|}
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</figtable>
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</div>
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== DifFoldX ==
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<div style="float:left; border:thin solid lightgrey; margin: 0px 0px 0px 0px;">
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<figtable id="tab:DifFoldX">
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<caption>Differences in stability (DDG=DGmutant-DGwt) of each SNP. Shown are all terms that contribute to the force field on which ''FoldX'' is based.</caption>
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{| class="wikitable sortable" style="border-collapse: collapse; border-spacing: 0; border-width: 1px; border-style: solid; padding-left:5px; padding-right:5px; border-color: #000; padding: 0"
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| SNP
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| total<br>energy
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Backbone<br>Hbond
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Sidechain<br>Hbond
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Van<br>der<br>Waals
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Electro-<br>statics
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Solvation<br>Polar
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Solvation<br>Hydrophobic
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Van der<br>Waals clashes
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| entropy<br>sidechain
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| entropy<br>mainchain
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| sloop<br>entropy
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| mloop<br>entropy
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| cis_bond
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| torsional<br>clash
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| backbone<br>clash
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! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| helix<br>dipole
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| water<br>bridge
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| disulfide
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| electro-<br>static<br>kon
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| partial<br>covalent<br>bonds
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| energy<br>Ionisation
  +
! style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 2px 0;"| Entropy<br>Complex
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| A143T
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.63
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.06
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -1.83
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.75
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.21
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.73
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 2.51
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.67
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.26
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.22
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.30
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| I289V
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.88
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.09
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.49
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.20
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.53
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.02
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| N215S
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.19
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.62
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -1.15
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.32
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.41
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.52
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.64
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.55
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.10
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.37
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| P40S
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 3.62
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.08
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.88
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.34
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.29
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.67
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.02
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.27
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.88
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.16
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.11
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| P323T
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.54
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.17
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.12
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.36
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.13
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.93
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.07
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.59
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| Q279E
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 2.95
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.41
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.56
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.19
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.25
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.16
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.13
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.53
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.29
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.16
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.08
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.95
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.21
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| R118H
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.19
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.87
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.91
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.31
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.50
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.08
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.89
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.06
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.27
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.07
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| R356W
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.23
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.57
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.34
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 2.16
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.93
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -1.40
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.22
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.94
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.49
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.04
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.07
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| S65T
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.16
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.17
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.18
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.60
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.96
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -1.18
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 1.35
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.12
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.03
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.06
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.18
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.05
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
|-
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0;"| V316I
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.59
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.58
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.01
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.38
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -1.14
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.14
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.53
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| -0.02
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.11
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.10
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  +
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
 
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
  
| style="border-style: solid; padding-left:5px; padding-right:5px; border-width: 0 1px 1px 0; text-align"| 0.00
 
|-
  
|-

Latest revision as of 19:05, 24 June 2012

RawFoldX

<figtable id="tab:RawFoldX"> Shown are the stability of each SNP and their relative wild-type. Shown are all terms that contribute to the force field on which FoldX is based.

SNP total
energy 		Backbone
Hbond 		Sidechain
Hbond 		Van
der
Waals 		Electro-
statics 		Solvation
Polar 		Solvation
Hydrophobic 		Van
der
Waals
clashes 		entropy
sidechain 		entropy
mainchain 		sloop
entropy 		mloop
entropy 		cis
bond 		torsional
clash 		backbone
clash 		helix
dipole 		water
bridge 		disulfide electro-
static
kon 		partial
covalent
bonds 		energy
Ionisation 		Entropy
Complex
A143T 31.44 -529.15 -155.59 -1014.65 -26.10 1312.56 -1319.12 100.42 482.91 1219.56 0.00 0.00 4.50 26.80 478.37 -12.55 -28.47 -29.91 -0.98 0.00 1.22 0.00
WT A143T 29.81 -529.22 -153.76 -1013.90 -26.11 1311.35 -1318.39 97.91 482.23 1219.30 0.00 0.00 4.50 26.58 478.07 -12.55 -28.47 -29.91 -0.98 0.00 1.22 0.00
I289V 36.24 -529.35 -151.82 -1013.29 -25.55 1311.51 -1317.47 98.75 481.64 1219.37 0.00 0.00 4.50 26.33 478.10 -12.55 -26.10 -29.93 -0.99 0.00 1.20 0.00
WT I289V 35.37 -529.43 -151.82 -1013.78 -25.55 1311.71 -1318.48 98.75 482.17 1219.35 0.00 0.00 4.50 26.33 478.10 -12.55 -26.10 -29.93 -0.99 0.00 1.20 0.00
N215S 38.86 -528.41 -151.01 -1013.17 -25.37 1310.85 -1317.54 99.20 481.78 1219.63 0.00 0.00 4.50 26.81 477.89 -12.60 -26.10 -29.93 -0.98 0.00 1.20 0.00
WT N215S 37.67 -529.02 -149.85 -1013.50 -25.37 1311.26 -1318.06 99.20 481.14 1219.07 0.00 0.00 4.50 26.71 478.26 -12.60 -26.10 -29.93 -0.98 0.00 1.20 0.00
P40S 37.21 -530.85 -154.19 -1013.56 -25.51 1313.03 -1317.00 97.66 482.07 1220.91 0.00 0.00 4.50 26.85 477.92 -12.49 -24.49 -29.93 -0.98 0.00 1.21 0.00
WT P40S 33.59 -530.77 -153.31 -1013.90 -25.51 1311.74 -1318.66 97.68 481.79 1220.03 0.00 0.00 4.50 26.69 478.03 -12.49 -24.49 -29.93 -0.98 0.00 1.21 0.00
P323T 40.08 -529.76 -150.69 -1013.70 -25.38 1312.03 -1318.30 99.25 481.63 1220.50 0.00 0.00 4.50 26.81 478.68 -12.50 -24.58 -29.93 -0.98 0.00 1.20 0.00
WT P323T 38.55 -529.76 -150.70 -1013.87 -25.39 1311.91 -1318.66 99.25 481.76 1219.57 0.00 0.00 4.50 26.73 478.08 -12.50 -24.58 -29.93 -0.98 0.00 1.20 0.00
Q279E 37.64 -530.27 -152.43 -1013.67 -24.44 1313.21 -1318.47 98.08 481.48 1218.79 0.00 0.00 4.50 26.80 478.17 -13.49 -22.95 -29.93 -0.77 0.00 1.20 0.00
WT Q279E 34.69 -530.67 -154.00 -1013.86 -25.69 1312.05 -1318.59 98.61 481.77 1218.95 0.00 0.00 4.50 26.80 478.26 -12.53 -22.94 -29.93 -0.98 0.00 1.20 0.00
R118H 37.25 -529.47 -152.89 -1013.41 -25.13 1311.38 -1318.08 96.48 482.44 1218.93 0.00 0.00 4.50 26.59 477.89 -12.34 -22.11 -29.93 -0.98 0.00 1.28 0.00
WT R118H 36.06 -530.35 -153.80 -1013.42 -25.43 1311.89 -1318.16 96.48 483.33 1218.87 0.00 0.00 4.50 26.59 477.89 -12.61 -22.11 -29.93 -0.98 0.00 1.20 0.00
R356W 35.46 -529.82 -150.23 -1015.29 -23.42 1312.57 -1321.47 95.54 480.76 1219.35 0.00 0.00 4.50 26.75 478.94 -12.61 -21.45 -29.93 -0.97 0.00 1.20 0.00
WT R356W 35.69 -529.82 -150.81 -1014.95 -25.58 1313.50 -1320.07 95.32 481.69 1218.86 0.00 0.00 4.50 26.75 478.90 -12.54 -21.45 -29.93 -0.97 0.00 1.20 0.00
S65T 43.53 -528.64 -150.17 -1014.88 -25.65 1314.65 -1320.38 100.56 481.75 1218.80 0.00 0.00 4.50 26.72 478.44 -12.45 -21.57 -29.93 -0.98 0.00 1.20 0.00
WT S65T 43.36 -528.48 -149.98 -1014.28 -25.64 1313.69 -1319.20 99.21 481.63 1218.84 0.00 0.00 4.50 26.78 478.27 -12.45 -21.52 -29.93 -0.98 0.00 1.20 0.00
V316I 42.91 -528.47 -150.17 -1014.46 -25.54 1313.66 -1319.82 99.34 482.04 1218.84 0.00 0.00 4.50 26.65 478.17 -12.38 -21.58 -29.93 -0.98 0.00 1.20 0.00
WT V316I 43.50 -528.46 -150.17 -1013.88 -25.55 1313.28 -1318.68 99.21 481.50 1218.86 0.00 0.00 4.50 26.54 478.06 -12.38 -21.58 -29.93 -0.98 0.00 1.20 0.00

</figtable>

DifFoldX

<figtable id="tab:DifFoldX"> Differences in stability (DDG=DGmutant-DGwt) of each SNP. Shown are all terms that contribute to the force field on which FoldX is based.

SNP total
energy 		Backbone
Hbond 		Sidechain
Hbond 		Van
der
Waals 		Electro-
statics 		Solvation
Polar 		Solvation
Hydrophobic 		Van der
Waals clashes 		entropy
sidechain 		entropy
mainchain 		sloop
entropy 		mloop
entropy 		cis_bond torsional
clash 		backbone
clash 		helix
dipole 		water
bridge 		disulfide electro-
static
kon 		partial
covalent
bonds 		energy
Ionisation 		Entropy
Complex
A143T 1.63 0.06 -1.83 -0.75 0.01 1.21 -0.73 2.51 0.67 0.26 0.00 0.00 0.00 0.22 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00
I289V 0.88 0.09 0.00 0.49 0.00 -0.20 1.01 -0.00 -0.53 0.02 0.00 0.00 0.00 -0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00
N215S 1.19 0.62 -1.15 0.32 0.00 -0.41 0.52 0.00 0.64 0.55 0.00 0.00 0.00 0.10 -0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00
P40S 3.62 -0.08 -0.88 0.34 0.00 1.29 1.67 -0.02 0.27 0.88 0.00 0.00 0.00 0.16 -0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00
P323T 1.54 0.00 0.01 0.17 0.01 0.12 0.36 0.00 -0.13 0.93 0.00 0.00 0.00 0.07 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00
Q279E 2.95 0.41 1.56 0.19 1.25 1.16 0.13 -0.53 -0.29 -0.16 0.00 0.00 0.00 -0.00 -0.08 -0.95 -0.01 0.00 0.21 0.00 0.00 0.00
R118H 1.19 0.87 0.91 0.01 0.31 -0.50 0.08 0.00 -0.89 0.06 0.00 0.00 0.00 -0.00 0.01 0.27 0.00 0.00 0.00 0.00 0.07 0.00
R356W -0.23 -0.00 0.57 -0.34 2.16 -0.93 -1.40 0.22 -0.94 0.49 0.00 0.00 0.00 -0.01 0.04 -0.07 0.00 0.00 0.01 0.00 0.00 0.00
S65T 0.16 -0.17 -0.18 -0.60 -0.01 0.96 -1.18 1.35 0.12 -0.03 0.00 0.00 0.00 -0.06 0.18 0.00 -0.05 0.00 0.00 0.00 0.00 0.00
V316I -0.59 -0.01 0.00 -0.58 0.01 0.38 -1.14 0.14 0.53 -0.02 0.00 0.00 0.00 0.11 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00

</figtable>

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