Difference between revisions of "MSUP-task7-journal"

From Bioinformatikpedia
(→‎Scwrl)
(→‎Scwrl)
Line 12: Line 12:
 
rhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpSpnllfsdvyq
  
rhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpSpnllfsdvyq
 
empaqlrkqqeslaHhlqtygehypldhfdK
  
empaqlrkqqeslaHhlqtygehypldhfdK
  +
  +
posmap:
  +
  +
<table border=1>
  +
<tr><td>snp-pos</td><td>pdb-pos-mapping</td></tr>
  +
<tr><td>N71S</td><td>N21S</td></tr>
  +
<tr><td>M82I</td><td>M32I</td></tr>
  +
<tr><td>Q125E</td><td>Q75E</td></tr>
  +
<tr><td>I213T</td><td>I158T</td></tr>
  +
<tr><td>C258Y</td><td>C203Y</td></tr>
  +
<tr><td>T310R</td><td>T255R</td></tr>
  +
<tr><td>A328T</td><td>A273T</td></tr>
  +
<tr><td>I361V</td><td>I285V</td></tr>
  +
<tr><td>N404S</td><td>N326S</td></tr>
  +
<tr><td>R429H</td><td>R351H</td></tr>
  +
</table>

Revision as of 13:20, 20 June 2012

Scwrl

Sequence extraction from pdb-file: 

/opt/SS12-Practical/scripts/repairPDB 2bfd_A.ent -chain A -seq

sequence mutated:
kpqfpgasaefidklefiqpSvisgipiyrvIdrqgqiinpsedphlp
kekvlklyksmtllntmdrilyesqrEgrisfymtnygegtvgsaaal
dntdlvfgareagvlmyrdyplelfmaqcygnisdlgkgrqpvygcke
rhfvtissplatqTpqavgaayaakrananrvvicyfgegaasegdah
agfnfaatleYpiiffcrnngyaistptseqyrgdgiaargpgygims
irvdgndvfavynaRkearrravaenqpflieTmtyrigstdhpVsrl
rhylqgwwdeeqekawrkqsrrkvmeafeqaerkpkpSpnllfsdvyq
empaqlrkqqeslaHhlqtygehypldhfdK

posmap:
snp-pospdb-pos-mapping
N71SN21S
M82IM32I
Q125EQ75E
I213TI158T
C258YC203Y
T310RT255R
A328TA273T
I361VI285V
N404SN326S
R429HR351H
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