Difference between revisions of "Structures for P00439 in PDB"

From Bioinformatikpedia
Line 1: Line 1:
 
When we checked for structures which are known for P00439 (PheOH) in the PDB we found several, of which we just used the one with the lowest Å- and r-Value.
  
When we checked for structures which are known for P00439 (PheOH) in the PDB we found several, of which we just used the one with the lowest Å- and r-Value.
  +
<figtable id="uniprotresult">
  +
<center><caption>Table with results from UNIProt with r-Value inserted</caption></center>
 
{| align="center"
  
{| align="center"
 
!|Entry
 
!|Entry
Line 9: Line 11:
 
!|PDBsum
  
!|PDBsum
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1DMW 1DMW]
−
|1DMW
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B118-424%5D 118-424]
−
|118-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1DMW »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1J8T 1J8T]
−
|1J8T
  
 
|X-ray
  
|X-ray
 
|1.70
  
|1.70
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1J8T »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1J8U 1J8U]
−
|1J8U
  
 
|X-ray
  
|X-ray
 
|1.50
  
|1.50
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1J8U »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1KW0 1KW0]
−
|1KW0
  
 
|X-ray
  
|X-ray
 
|2.50
  
|2.50
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1KW0 »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1LRM 1LRM]
−
|1LRM
  
 
|X-ray
  
|X-ray
 
|2.10
  
|2.10
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1LRM »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1MMK 1MMK]
−
|1MMK
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1MMK »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1MMT 1MMT]
−
|1MMT
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B103-427%5D 103-427]
−
|103-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1MMT »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1PAH 1PAH]
−
|1PAH
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1PAH »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1TDW 1TDW]
−
|1TDW
  
 
|X-ray
  
|X-ray
 
|2.10
  
|2.10
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1TDW »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/1TG2 1TG2]
−
|1TG2
  
 
|X-ray
  
|X-ray
 
|2.20
  
|2.20
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/1TG2 »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/2PAH 2PAH]
−
|2PAH
  
 
|X-ray
  
|X-ray
 
|3.10
  
|3.10
 
|
  
|
 
|A/B
  
|A/B
  +
|[http://www.uniprot.org/blast/?about=P00439%5B118-452%5D 118-452]
−
|118-452
  
  +
|[[http://www.ebi.ac.uk/pdbsum/2PAH »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/3PAH 3PAH]
−
|3PAH
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/3PAH »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/4ANP 4ANP]
−
|4ANP
  
 
|X-ray
  
|X-ray
 
|2.11
  
|2.11
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B104-427%5D 104-427]
−
|104-427
  
  +
|[[http://www.ebi.ac.uk/pdbsum/4ANP »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/4PAH 4PAH]
−
|4PAH
  
 
|X-ray
  
|X-ray
 
|2.00
  
|2.00
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/4PAH »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/5PAH 5PAH]
−
|5PAH
  
 
|X-ray
  
|X-ray
 
|2.10
  
|2.10
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/5PAH »]]
−
|[»]
  
 
|-
  
|-
  +
|[http://www.ebi.ac.uk/pdbe-srv/view/entry/6PAH 6PAH]
−
|6PAH
  
 
|X-ray
 
|X-ray
 
|2.15
  
|2.15
 
|
  
|
 
|A
  
|A
  +
|[http://www.uniprot.org/blast/?about=P00439%5B117-424%5D 117-424]
−
|117-424
  
  +
|[[http://www.ebi.ac.uk/pdbsum/6PAH »]]
−
|[»]
  
 
|-
  
|-
 
|}
  
|}
  +
</figtable>
  +
In <xr id="uniprotresult"/> there are all results according to which we selected 1J8U to be our reference for this weeks task.

Revision as of 13:27, 18 June 2012

When we checked for structures which are known for P00439 (PheOH) in the PDB we found several, of which we just used the one with the lowest Å- and r-Value. <figtable id="uniprotresult">

Table with results from UNIProt with r-Value inserted
Entry Method Resolution (Å) r-Value Chain Positions PDBsum
1DMW X-ray 2.00 A 118-424 [»]
1J8T X-ray 1.70 A 103-427 [»]
1J8U X-ray 1.50 A 103-427 [»]
1KW0 X-ray 2.50 A 103-427 [»]
1LRM X-ray 2.10 A 103-427 [»]
1MMK X-ray 2.00 A 103-427 [»]
1MMT X-ray 2.00 A 103-427 [»]
1PAH X-ray 2.00 A 117-424 [»]
1TDW X-ray 2.10 A 117-424 [»]
1TG2 X-ray 2.20 A 117-424 [»]
2PAH X-ray 3.10 A/B 118-452 [»]
3PAH X-ray 2.00 A 117-424 [»]
4ANP X-ray 2.11 A 104-427 [»]
4PAH X-ray 2.00 A 117-424 [»]
5PAH X-ray 2.10 A 117-424 [»]
6PAH X-ray 2.15 A 117-424 [»]

</figtable> In <xr id="uniprotresult"/> there are all results according to which we selected 1J8U to be our reference for this weeks task.

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