Difference between revisions of "Predicting the Effect of SNPs (PKU)"
From Bioinformatikpedia
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| − | =Short Introduction= |
+ | ==Short Introduction== |
This week's task builds on the data gathered [[Researching_SNPs_(PKU)|last week]]. We blindly choose 5 disease causing and 5 harmless SNPs and will try to predict their effect from the sequence change alone. You may find a detailed task description [[Task_6_-_Sequence-based_mutation_analysis|at the usual place]]. |
This week's task builds on the data gathered [[Researching_SNPs_(PKU)|last week]]. We blindly choose 5 disease causing and 5 harmless SNPs and will try to predict their effect from the sequence change alone. You may find a detailed task description [[Task_6_-_Sequence-based_mutation_analysis|at the usual place]]. |
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| − | = Our dataset = |
+ | == Our dataset == |
we propose the following dataset: |
we propose the following dataset: |
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You could check them, if you like.. I put them together 5 minutes ago and already forgot, which are which. ;-) |
You could check them, if you like.. I put them together 5 minutes ago and already forgot, which are which. ;-) |
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| + | == Prediction Methods == |
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| + | ===SIFT=== |
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| + | ===PolyPhen2=== |
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| + | ===SNAP=== |
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Revision as of 12:33, 12 June 2012
Short Introduction
This week's task builds on the data gathered last week. We blindly choose 5 disease causing and 5 harmless SNPs and will try to predict their effect from the sequence change alone. You may find a detailed task description at the usual place.
Our dataset
we propose the following dataset:
- GLU76GLY
- SER87ARG
- GLN172HIS
- ARG158GLN
- ARG243GLN
- LEU255SER
- MET276VAL
- ALA322GLY
- GLY337VAL
- ARG408TRP
You could check them, if you like.. I put them together 5 minutes ago and already forgot, which are which. ;-)
