Difference between revisions of "TSD Homology modelling protocol"
From Bioinformatikpedia
(→6 A RMSD) |
|||
| Line 17: | Line 17: | ||
</source> |
</source> |
||
| − | == |
+ | ==6Å RMSD using Pymol== |
| + | *Load template and model |
||
| + | *For each select active site |
||
| + | *Expand selections by 6Å |
||
| + | *Extract selections into objects |
||
| + | *Align objects |
||
Revision as of 20:24, 1 June 2012
Back to results.
Template selection
HHpred and COMA were employed in order to complement the 3 sequence identity classes.
SWISS-MODEL
The modelling was performed with the webserver of SWISS-MODEL in automated mode and alignment mode.
iTasser
Modeller
Get all necessary files <source lang="bash">
test
</source>
6Å RMSD using Pymol
- Load template and model
- For each select active site
- Expand selections by 6Å
- Extract selections into objects
- Align objects
