Difference between revisions of "Task 4: Homology-based structure prediction"
From Bioinformatikpedia
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! <30% Sequence Identity |
! <30% Sequence Identity |
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| − | |- |
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| − | |1w85_A |
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| − | |3.6e-76 |
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| − | |32% |
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| − | |0.576 |
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| − | |- |
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| − | |1umd_A |
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| − | |2e-75 |
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| − | |37% |
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| − | |0.577 |
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|2ozl_A |
|2ozl_A |
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Revision as of 14:27, 30 May 2012
More detailed information about the generation of the results can be found in the Task 4 Protocol.
Datasets
In order to generate a model for our protein we first need to find homologous structures on which we base our model on. For this task we use HHpred and COMA.
HHpred
| PDB ID | e-Value | Identity | Similarity |
|---|---|---|---|
| >80% Sequence Identity | |||
| 2BFD | 1.2e-84 | 99% | 1.508 |
| 80-40% Sequence Identity | |||
| 1qs0_A | 1.1e-79 | 39% | 0.580 |
| <30% Sequence Identity | |||
| 2ozl_A | 3.6e-71 | 27% | 0.403 |
| 2yic_A | 1.2e-55 | 14% | 0.116 |
| 2xt6_A | 2.9e-55 | 14% | 0.121 |
| 2jgd_A | 4e-55 | 14% | 0.099 |
| 2o1s_A | 2.1e-27 | 20% | 0.200 |
| 3kom_A | 2.4e-26 | 18% | 0.148 |
COMA
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