Difference between revisions of "Task 4: Homology-based structure prediction"

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|2ozl_A
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|3.6e-71
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Revision as of 14:26, 30 May 2012

More detailed information about the generation of the results can be found in the Task 4 Protocol.

Datasets

In order to generate a model for our protein we first need to find homologous structures on which we base our model on. For this task we use HHpred and COMA.

HHpred

PDB ID e-Value Identity Similarity
>80% Sequence Identity
2BFD 1.2e-84 99% 1.508
80-40% Sequence Identity
1qs0_A 1.1e-79 39% 0.580
<30% Sequence Identity
1w85_A 3.6e-76 32% 0.576
1umd_A 2e-75 37% 0.577
2ozl_A 3.6e-71 27% 0.403
2yic_A 1.2e-55 14% 0.116
2xt6_A 2.9e-55 14% 0.121
2jgd_A 4e-55 14% 0.099
2o1s_A 2.1e-27 20% 0.200
3kom_A 2.4e-26 18% 0.148

COMA

blah

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