Difference between revisions of "Homology modelling Gaucher Disease"
From Bioinformatikpedia
| Line 46: | Line 46: | ||
=== Results === |
=== Results === |
||
<figtable id="tab:modeller_results"> |
<figtable id="tab:modeller_results"> |
||
| − | {| style="border-collapse: separate; border-style: solid; border-spacing: 0; border-width: 2px 0 2px 0; text-align:right" |
+ | {| style="border-collapse: separate; border-style: solid; border-spacing: 0; border-width: 2px 0 2px 0; text-align:right" width="700px" |
| − | |- style="background-color: lightgrey" |
+ | |- style="background-color: lightgrey; height=0" |
! style="border-style:solid; border-width: 0 1px 0 0" | Template |
! style="border-style:solid; border-width: 0 1px 0 0" | Template |
||
! DOPE |
! DOPE |
||
| − | ! DOPE |
+ | ! DOPE z-score |
| + | ! style="border-style:solid; border-width: 0 1px 0 0" | QMEAN6 |
||
| − | ! QMEAN6 |
||
! RMSD |
! RMSD |
||
! TM-score |
! TM-score |
||
Revision as of 15:23, 28 May 2012
Template selection
<figtable id="tab:ss_mapping">
| Hit Nr | Template | Identity | HHsearch prob |
|---|---|---|---|
| > 80% sequence identity | |||
| 1 | 2nt0_A | 100.0 | 100.0 |
| 40% - 80% sequence identity | |||
| < 30% sequence identity | |||
| 2 | 2wnw_A | 28.0 | 100.0 |
| 3 | 3clw_A | 14.0 | 100.0 |
| 4 | 2y24_A | 18.0 | 100.0 |
| 5 | 3kl0_A | 19.0 | 100.0 |
| 6 | 3zr5_A | 17.0 | 100.0 |
| 7 | 3ik2_A | 14.0 | 99.2 |
| 22 | 3nco_A | 11.0 | 97.7 |
</figtable>
Modeller
Results
<figtable id="tab:modeller_results">
| Template | DOPE | DOPE z-score | QMEAN6 | RMSD | TM-score | GDT_TS | GTD_HA |
|---|---|---|---|---|---|---|---|
| 2wnw_A | -55925 | -0.471 | 0.689 | 1.006 | 0.824 | 0.661 | 0.479 |
| 2y24_A | -47194 | 0.777 | 0.376 | 1.222 | 0.550 | 0.294 | 0.223 |
| 3nco_A | -44033 | 1.224 | 0.139 | 2.158 | 0.252 | 0.093 | 0.043 |
</figtable>
