Difference between revisions of "Homology modelling Gaucher Disease"

From Bioinformatikpedia
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|[[File:modeller-1ogs_A-3nco_A.png|thumb|150px|3nco_A]]
  
|[[File:modeller-1ogs_A-3nco_A.png|thumb|150px|3nco_A]]
 
|}
  
|}
  +
  +
=== Results ===
  +
<figtable id="tab:modeller_results">
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{| style="border-collapse: separate; border-style: solid; border-spacing: 0; border-width: 2px 0 2px 0; text-align:right"
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|- style="background-color: lightgrey"
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! style="border-style:solid; border-width: 0 1px 0 0" | Template
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! DOPE
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! DOPE zscore
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! QMEAN6
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! RMSD
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! TM-score
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! GDT_TS
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! GTD_HA
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|-
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| style="border-style:solid; border-width: 1px 0 0 0" colspan=8|
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|-
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|style="border-style:solid; border-width: 0 1px 0 0" | 2wnw_A
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| -55925
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| -0.471
  +
| style="border-style:solid; border-width: 0 1px 0 0" | 0.689
  +
| 1.006
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| 0.824
  +
| 0.661
  +
| 0.479
  +
|-
  +
|style="border-style:solid; border-width: 0 1px 0 0" | 2y24_A
  +
| -47194
  +
| 0.777
  +
| style="border-style:solid; border-width: 0 1px 0 0" | 0.376
  +
| 1.222
  +
| 0.550
  +
| 0.294
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| 0.223
  +
|-
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|style="border-style:solid; border-width: 0 1px 0 0" | 3nco_A
  +
| -44033
  +
| 1.224
  +
| style="border-style:solid; border-width: 0 1px 0 0" | 0.139
  +
| 2.158
  +
| 0.252
  +
| 0.093
  +
| 0.043
  +
|}
  +
</figtable>

Revision as of 15:18, 28 May 2012

Template selection

<figtable id="tab:ss_mapping">

Hit Nr Template Identity HHsearch prob
> 80% sequence identity
1 2nt0_A 100.0 100.0
40% - 80% sequence identity
< 30% sequence identity
2 2wnw_A 28.0 100.0
3 3clw_A 14.0 100.0
4 2y24_A 18.0 100.0
5 3kl0_A 19.0 100.0
6 3zr5_A 17.0 100.0
7 3ik2_A 14.0 99.2
22 3nco_A 11.0 97.7

</figtable>

Modeller

2wnw_A
2y24_A
3nco_A

Results

<figtable id="tab:modeller_results">

Template DOPE DOPE zscore QMEAN6 RMSD TM-score GDT_TS GTD_HA
2wnw_A -55925 -0.471 0.689 1.006 0.824 0.661 0.479
2y24_A -47194 0.777 0.376 1.222 0.550 0.294 0.223
3nco_A -44033 1.224 0.139 2.158 0.252 0.093 0.043

</figtable>

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